RNA id: TCONS_00019653


Basic Information

Item Value
RNA id TCONS_00019653
length 969
RNA type mRNA
GC content 0.52
exon number 12
gene id XLOC_009844
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20198064 ~ 20238985 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCGCACTGGTCCTCCTGGTCTTCCAGGACGTCAGGGACCAAGCGGATGGCAAGGACCAACTGGGCCTAAAGGGGAGAAAGGTGACCCGGGATTGATGGGATTGCCAGGGGCTAGAGGACCAATGGGACCCAAGGGCTTACATGGATTTAAAGGGGAAAAAgGTTCACAAGGTTTCAGAGGTGAAATTGGCTTAAAAGGTGACCGAGGATCAATGGGTCTACCTGGAATGCTGGGAcaaaagGGTGAAATGGGCCCTAAAGGAGAACCTGGAAGCTCGGGAAACAGGGGACCCACTGGCCGCCCAGGAAAAAGAGGAAAGCAGGGGTCAAAAGGTGACACTGGTGCAATTGGACCCATGGGACCTGGAGGCCCTCCTGGGGCCCCTGGTCATCCTGGCCCTCCTGGAGTGTCCGCCTCagGACTGTATATGGTCGGACAAAAAGGAGACAAAGGACAACAAGGTAGTCCGGGTCGCTGTAGCTGTAATGTCCCAGCCAACCCCTCTTTGGACCACCTGCACTGGAGTATCTATCCCAGAGTGCCTGCAATATTTGTGGTGAATAATGAACAGGAGCTGAACCGTGTCCAGACTGAAAATGCGTTGGCCTTTCGTAAAGATCAGAGGTCACTTTACTTTAAAGACACTGGCGGCTGGATGCCAATTCAGTTAACACCGTTCCAGTCGATGGAGAGCGATCCTGATCCGGAGGGATTCTGCGGAGACAGCATTGTGCAAGTTGAAAACGGAGAGGAGTGTGATGACGGAAATAAGGTGGTCACAGATGGCTGTGTCAAATGCAAACTTGCATATTGTGGGGATGGATATCGCTACGAAGAGGCTGAAGAGTGTGATGGAAAGGACTTTGGCTTTCACACATGCAGATCCTTTTTGCCTGGATCCTATGGGCACCTCAAGTGCACTGCTGACTGTTTCATAGACTCAACAAACTGCAAGTATTTCACATGA

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0008201 heparin binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-119 Predicted to enable heparin binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 5. Orthologous to human COLQ (collagen like tail subunit of asymmetric acetylcholinesterase).

Ensembl:

ensembl_id ENSDART00000182208

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019646 lncRNA upstream 411108 19807943 ~ 19809117 (+) True XLOC_009840
TCONS_00021706 lncRNA upstream 411152 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA upstream 411152 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00021918 lncRNA upstream 411317 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00019645 lncRNA upstream 413092 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021919 lncRNA downstream 295571 20530125 ~ 20531772 (+) True XLOC_009847
TCONS_00021920 lncRNA downstream 450386 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021708 lncRNA downstream 454362 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00019660 lncRNA downstream 636461 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019662 lncRNA downstream 636490 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019650 mRNA upstream 25840 20167811 ~ 20194385 (+) False XLOC_009843
TCONS_00019649 mRNA upstream 55771 20161805 ~ 20164454 (+) True XLOC_009842
TCONS_00019648 mRNA upstream 65366 20056030 ~ 20154859 (+) True XLOC_009841
TCONS_00019647 mRNA upstream 68478 20055878 ~ 20151747 (+) False XLOC_009841
TCONS_00019644 mRNA upstream 486076 19732543 ~ 19734149 (+) True XLOC_009839
TCONS_00019654 mRNA downstream 60422 20294976 ~ 20305104 (+) False XLOC_009845
TCONS_00019656 mRNA downstream 262137 20496691 ~ 20515806 (+) False XLOC_009846
TCONS_00019657 mRNA downstream 262176 20496730 ~ 20514920 (+) False XLOC_009846
TCONS_00019659 mRNA downstream 504186 20738740 ~ 20800498 (+) True XLOC_009849
TCONS_00019661 mRNA downstream 636467 20871021 ~ 20889516 (+) False XLOC_009850
TCONS_00019651 other upstream 49397 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 515687 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 1091754 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 2649291 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 2703143 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019655 other downstream 62269 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 262219 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 678859 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 1464452 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 3163247 23397801 ~ 23399160 (+) False XLOC_009882

Expression Profile

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