RNA id: CI01000304_16305853_16306849.mRNA



Basic Information


Item Value
RNA id CI01000304_16305853_16306849.mRNA
length 934
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000304_16305853_16306849
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16305388 ~ 16306901 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTCTTTAAAAATCATAAGAATTTAAGGAAAATTAAAAATAAAAAGGATAAAATGACAAGCTTAAGATCAACCAGTGTTGTCAGCAAACGCAGAAGCAAGTCCCAAGATAACATCACTTATGCTAATCTATGTATTACTGTATCTCTTGCAAAGGAAATCAGATCAAGACCAGGACACATACAGCAGTCATTAGGAAGGTCCTGTGGCTCTGCCTTTTTAATGGTGCGATCAAAAATGTCCGCCCATCCGCTGTTGTCCCCTGCAGAAATTATCGGCAAAGTGAAAAAGACAGATATATGTGGCCTCACCGCAGTGCTCCTCATCTGCTCCGTTCTTGCAGTCCCTGTGGCCATTACACTGAAGGACCTGGGGCAAACACACACTCATGTTCCCACAAGGGAACTGTCCGAGAGGGCAACCTTCTGTCACCGCCCTGCTAGCCATCATGGATGCTGCTGGCGGCAATAAGGAAAGGGCAGAAAGAGGAAGAGAAGGAAAAGTTATAAAAGTACAAAAAGGGCATGGGTGAAAAGCTCTTTAAATCGCAGCAGTACTTTGTGCTTCCATCAGGCCAAAGTAGATGACTGGAAGCCCTCCAGCAGTGTTAGATGGAAAACACAAGCCAAAGCGGATGAATGTGCACCAAAATACAGCAGAGTTCAATTGAGTTTGACCTTTGATGTCAAAAAAAAAGATATAGCGAGTGTATCTTTGGCATATTTATTTTACCATCCTAACCATGCACGATTCCAGTTGCTGCAGTAAATACAATAATGTGAAAAGCACTCACACAGCGCATGAAGACAATGCTGTATTTTGTAATCGGAAAATATGACATCTATGAAGACGGGGCTCCCTATGGAACGCAATTATTCTTCTTTCCATCTCTGACATGACTCTAGAGGCGTCAGGCCAGTTTTTCGCAATAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU492073 lncRNA downstream 24867 16280266 ~ 16280521 (-) True G428547
TU492023 lncRNA downstream 84975 16220029 ~ 16220413 (-) True G428502
TU492030 lncRNA downstream 85496 16218523 ~ 16219892 (-) True G428509
TU492027 lncRNA downstream 89362 16209089 ~ 16216026 (-) True G428506
TU492059 lncRNA downstream 105867 16197817 ~ 16199521 (-) True G428533
TU492167 lncRNA upstream 280574 16587475 ~ 16594509 (-) True G428638
TU492216 lncRNA upstream 296649 16603550 ~ 16604288 (-) False G428681
TU492217 lncRNA upstream 296649 16603550 ~ 16609014 (-) True G428681
TU492245 lncRNA upstream 505283 16812184 ~ 16812467 (-) True G428707
TU492248 lncRNA upstream 572168 16879069 ~ 16879279 (-) True G428710
CI01000304_16247523_16254506.mRNA mRNA downstream 50882 16246383 ~ 16254506 (-) True CI01000304_16247523_16254506
CI01000304_16232120_16237285.mRNA mRNA downstream 68103 16231549 ~ 16237285 (-) True CI01000304_16232120_16237285
CI01000304_16221131_16225319.mRNA mRNA downstream 80069 16220734 ~ 16225319 (-) True CI01000304_16221131_16225319
CI01000304_16202982_16207060.mRNA mRNA downstream 98271 16202820 ~ 16207117 (-) True CI01000304_16202982_16207060
CI01000304_16123390_16127834.mRNA mRNA downstream 177054 16123162 ~ 16128334 (-) True CI01000304_16123390_16127834
CI01000304_16402321_16404006.mRNA mRNA upstream 94710 16401611 ~ 16404006 (-) True CI01000304_16402321_16404006
CI01000304_16414561_16417605.mRNA mRNA upstream 107601 16414502 ~ 16417605 (-) True CI01000304_16414561_16417605
CI01000304_16451635_16453520.mRNA mRNA upstream 144476 16451377 ~ 16456557 (-) True CI01000304_16451635_16453520
CI01000304_16651076_16668623.mRNA mRNA upstream 342965 16649866 ~ 16668915 (-) True CI01000304_16651076_16668623
CI01000304_16684166_16704849.mRNA mRNA upstream 377159 16684060 ~ 16706094 (-) True CI01000304_16684166_16704849
TU490768 other downstream 1043983 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 1943496 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2017784 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 2035817 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 2097089 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 472463 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 547664 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1616962 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1930818 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 2279541 18586442 ~ 18591856 (-) False G429673

Expression Profile