RNA id: CI01000304_16651076_16668623.mRNA


Basic Information

Item Value
RNA id CI01000304_16651076_16668623.mRNA
length 2897
RNA type mRNA
GC content 0.47
exon number 13
gene id CI01000304_16651076_16668623
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16649866 ~ 16668915 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATAATAACCAACTAAATAACGCCTCATTTCAAGTAGGTTAATTGAAGAGAATTGGTCATTTGACATTATGTTTTAATACACATAAGGTGCGAGACCTTAGAAATCACTATTTCATGTTAAAATACGGTACTGTTTATGTTTGTATCTGGCCGTGGTTCGAGTGCCATTAAAGGTCTGTCGGTGAGAATATTCGGCGCGTTTCCACCATTACCTCAGCCCGCGCGCCTCCCACTTACCGTACTGCACTGGCTCAGGCGCGCGTCACAGCTACGCAAGCAGACTGCGAGCCAATGAGCGAGCAGCGGCTCACGCTCTGTACTCCGCTCTGCTCTCCGCCGCTCCATTCATTGGAATCCGCGCTCGGCGAGTGCTGCTGCTTTCTGCCACCTGGAATAGCACTGTGTCTCAAGATGCTGCAATACGAAGTGAATGGGACCCCAGCTAGTCAGCTGTCCACACCCCATTCTGCAAAGTCGCCCAGTCCGTCCCCCACCAGCCCGGGGAGCTTGAAGAAACGCAGGGGATCCCAGCACAGCGGTTCCTCTGTGTCTCTGGCCTCTACCAAAGTCTGCAGTATGGATGAGGAGGAAGGGTCTGTGAGCGATGCCGAGCCCTTGGAGGAGACGCCGATACCCACAGTCCCTAGCTCCATTTCAGATCGGTACAAAGTCGGCCGAATGATCGGAGACGGGAATTTTGCAGTGGTCCATGAATGTGTGGAGCACTCAACTGGCAGGGCGTACGCTCTGAAGATCATCAACAAAGGCAAATGCAGAGGGAAGGAGCATATGATCCAGAATGAGGTGGCTATCCTAAGAAGAGTGAAACATCCAAACATTGTGCTGCTGATTGAGGAAATGGACACTTACAGTGAACTCTACCTGGTCATGGAGCTTGTAAAGGGAGGAGATCTTTTTGATGCCATCACCTCCGCCAACAGATACACTGAGCGGGACGCCAGTGGCATGCTGTACAACTTGGCCAATGCTATTAAGTACTTACACAGCCTTAACATCGTTCACCGAGACATCAAGCCAGAGAACCTTTTGGTCTACGAGCACCAAGACGGAAGCAAATCGCTGAAGCTGGGCGACTTTGGCTTGGCCACCGTGGTAGACGGACCCCTGTACACTGTCTGTGGAACACCCACATATGTAGCACCAGAGATTATCGCAGAGACCGGGTATGGCCTTAAGGTAGATATCTGGGCCGCTGGAGTCATCACATATATTCTCCTCTGTGGCTTTCCTCCATTTCGTGGGAGCACTGATGATCAAGAAGCTCTGTTTGACCAGATACTGCTGGGACAGTTAGAATTCCCTCCCCCGTACTGGGACAATGTATCCGACTCAGCCAAAGAGCTGATCGTGTCTATGCTGCAGGTGGAAGTGGATCAGAGATACACAGCGCTGCAGGTGCTGGAACATCCCTGGGTCACTAATGACGGTCTGTCAGAAAACGAGCACCAGCTGTCAGTGGCAGGAAAGATCAAGAAGCACTTTAACACCGGGCCCAAACCCAGCAACAACACCCCAGGAGTGTCTGTCATGACGCTCGACCATGACTTTTCCATCCAGAGATCAGGGTCGTTGGATTTCTATCAGAACCCGGGCATGTTTTGGATAAGACCACCGCTCTTGATAAGGAGAGGCAGATTTTCCGACGAGGACGCCACCAGAATGTGAGCGCAGCTCCCTGGACCACCCAGCCGACCTGTAGCCTCCACATTCCAGCCTTTACGCCCCGTCTGTGCCCCGGTCTGCACCTCGACCCCACGTCCCAGCCGCCCACTGGACTTCCTGCTCCAGCCCTATTATCCAGTCCATGTCCCTCTACCACCACCGCCACCACCACCACCACGCCCGAGTCTGAAGACTTTTCCGCCTGCTCCACGGAGACTGTTCGCTCCCTCTTCTCCCCTTTCTAGCATTGAAAGGAAAGAGAGCGAGTGGAAAGGGCACTAAAAGAGGAGAAGGGTTTATGAGGATTCGGAACGCGGCCGAGTGGACTGATGAACTGAACCGAACCATTTTGTAATCTGATCACATAAAGGTGCAGGGTAAACGATGACCGTCAAGAAGGGGGTTTCTTGTTTATTTATGGTCATTATAATAACTTTTTCATCTATTTATACATAAAGAATACATTTTCTTTTTTTATTCAACTTCAAAAATATCCTCTTTTTCTGTTGAAGCACCTTAGAAATTTGATGTTTTTATTGGTCCGGTATTGTTCATATGCTCCAGAAGGAATCTGTAAGGACACTATAACTGATTAGCTAATGTCATTCTTGGTAATTAGTATTCCGTGTTCCCAAAAACCTCTCTAAGCAGACTGAAAATGGTTTGCATTGCCGATACCTCTTAAGAGATAAACTTGTATCTGGATTTCCTTCCCTTTGTGGTCACAGTACTGGACGCACAGCACTTGTTCATACGTGAGATGGGGACCTTGTTTTGTAATCAGTGTAAATAATATAATTTCAATTATTTTGATATTGACAATATATTTCTTTATCTTATCTAGACAATGTAAGTCACATTTAACCATTTTTGCAGTTTTTAAGTATATGGAACATAAGCACAAATGCATTGAGGGAAAGACATAAGCAACATTCCTTAATACAGGGTCAGCTCTTGGAAATACAAATGCCAACGGTTCGTTCTGATTAATTCCATTTCATTAATGCAGGACATTCATTCATTGGTAGTGCTGTGTAATGAGAAGCGCTGCTGTTGGTGTCAGGAGGTTAGATTAGGGTTGAGTGTTCCTGAAGTGCAGTAAGAGGTGTTCTAGTAACTCATAGCCCTGCTTACGGTGTCATTGTATTCTCTCATTAGTGCATGGAATACAGAGTGGCTCTTACATTATAATTTGAGACATTATCTTATTAAA

Function

GO:

id name namespace
GO:0048675 axon extension biological_process

KEGG:

id description
K08805 DCLK1_2; doublecortin-like kinase 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492217 lncRNA downstream 40852 16603550 ~ 16609014 (-) True G428681
TU492216 lncRNA downstream 45578 16603550 ~ 16604288 (-) False G428681
TU492167 lncRNA downstream 55357 16587475 ~ 16594509 (-) True G428638
TU492073 lncRNA downstream 369345 16280266 ~ 16280521 (-) True G428547
TU492023 lncRNA downstream 429453 16220029 ~ 16220413 (-) True G428502
TU492245 lncRNA upstream 143269 16812184 ~ 16812467 (-) True G428707
TU492248 lncRNA upstream 210154 16879069 ~ 16879279 (-) True G428710
TU492192 lncRNA upstream 217539 16886454 ~ 16886952 (-) False G428662
TU492193 lncRNA upstream 217539 16886454 ~ 16886952 (-) True G428662
TU492251 lncRNA upstream 245894 16914809 ~ 16916803 (-) True G428713
CI01000304_16451635_16453520.mRNA mRNA downstream 193309 16451377 ~ 16456557 (-) True CI01000304_16451635_16453520
CI01000304_16414561_16417605.mRNA mRNA downstream 232261 16414502 ~ 16417605 (-) True CI01000304_16414561_16417605
CI01000304_16402321_16404006.mRNA mRNA downstream 245860 16401611 ~ 16404006 (-) True CI01000304_16402321_16404006
CI01000304_16305853_16306849.mRNA mRNA downstream 342965 16305388 ~ 16306901 (-) True CI01000304_16305853_16306849
CI01000304_16247523_16254506.mRNA mRNA downstream 395360 16246383 ~ 16254506 (-) True CI01000304_16247523_16254506
CI01000304_16684166_16704849.mRNA mRNA upstream 15145 16684060 ~ 16706094 (-) True CI01000304_16684166_16704849
CI01000304_16711244_16719831.mRNA mRNA upstream 42329 16711244 ~ 16719831 (-) True CI01000304_16711244_16719831
CI01000304_16722727_16724691.mRNA mRNA upstream 53652 16722567 ~ 16724848 (-) True CI01000304_16722727_16724691
CI01000304_16746258_16751678.mRNA mRNA upstream 76788 16745703 ~ 16751678 (-) True CI01000304_16746258_16751678
CI01000304_16754929_16761111.mRNA mRNA upstream 85809 16754724 ~ 16761111 (-) True CI01000304_16754929_16761111
TU490768 other downstream 1388461 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2287974 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2362262 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 2380295 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 2441567 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 110449 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 185650 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1254948 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1568804 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1917527 18586442 ~ 18591856 (-) False G429673

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005360 False 2294 mRNA 0.49 12 NC_007121.7 34737322 ~ 34772211 (-)