RNA id: TCONS_00019658


Basic Information

Item Value
RNA id TCONS_00019658
length 649
RNA type processed_transcript
GC content 0.47
exon number 7
gene id XLOC_009846
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20496691 ~ 20515806 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACAACAACCTGATTTTTAGTTTACTCATGTTTCATCTGCCAGTGTAAACGGTTTCTGGATTTCTCGTTGGATTTTGGCCTTTGGCCAAAAAACTGAGTTTGGTGGGTCCCCTTCCTGGTGCCAATGTCAAGAGTTACTCTGGATATCTCACTGTGAACAAGACCTACAACAGCAACCTTTTCTTCTGGTTCTTCCCTGCCCAGGAGAGACCAGAGACTGCTCCGGTTCTGCTGTGGCTGCAAGGAGGACCAGGAGGAACCTCTATGTTTGGCTTGTTTGTGGAGCACGGCCCATATTTTGTATATAAGAATCTCACATTGGGCTATAGGCATTTCCCCTGGACATCACGCTATTCAGTTCTCTACATTGACAACCCGGTTGGGACAGGATGGAGTTTCACTGAGGATGACCGAGGGTTTGCCCAAAACCAGGATGATGTGGGCAGAGACTTGTATAGTGCCCTGACTCAATTCTTCCAGATATTTAGGGAGTTCCAGTCAAATCCGTTTTATGCTACTGGCGAGTCATATGCAGGAAAGTATGTTCCAGCGATTGGCTACTACATCCACAGGAACAATCCCTCCGCTAAAGTGAAGATCAATTTTAAAGGAGTGGCCATTGGAGATGGATTGTGTGACCCTGAACtg

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004180 carboxypeptidase activity molecular_function
GO:0004185 serine-type carboxypeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-031219-2 Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in yolk syncytial layer. Orthologous to human CPVL (carboxypeptidase vitellogenic like).

Ensembl:

ensembl_id ENSDART00000147067

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019646 lncRNA upstream 687656 19807943 ~ 19809117 (+) True XLOC_009840
TCONS_00021706 lncRNA upstream 687700 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA upstream 687700 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00021918 lncRNA upstream 687865 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00019645 lncRNA upstream 689640 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021919 lncRNA downstream 25260 20530125 ~ 20531772 (+) True XLOC_009847
TCONS_00021920 lncRNA downstream 180075 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021708 lncRNA downstream 184051 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00019660 lncRNA downstream 366150 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019662 lncRNA downstream 366179 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019654 mRNA upstream 191669 20294976 ~ 20305104 (+) False XLOC_009845
TCONS_00019652 mRNA upstream 257788 20198064 ~ 20238985 (+) False XLOC_009844
TCONS_00019653 mRNA upstream 262219 20220225 ~ 20234554 (+) True XLOC_009844
TCONS_00019650 mRNA upstream 302388 20167811 ~ 20194385 (+) False XLOC_009843
TCONS_00019649 mRNA upstream 332319 20161805 ~ 20164454 (+) True XLOC_009842
TCONS_00019659 mRNA downstream 233875 20738740 ~ 20800498 (+) True XLOC_009849
TCONS_00019661 mRNA downstream 366156 20871021 ~ 20889516 (+) False XLOC_009850
TCONS_00019664 mRNA downstream 391039 20895904 ~ 20897836 (+) True XLOC_009851
TCONS_00019665 mRNA downstream 399889 20904754 ~ 20907378 (+) True XLOC_009852
TCONS_00019666 mRNA downstream 405321 20910186 ~ 20913003 (+) True XLOC_009853
TCONS_00019655 other upstream 192498 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 325945 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 792235 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 1368302 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 2925839 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019667 other downstream 408548 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 1194141 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 2892936 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 3102366 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 3333055 23837920 ~ 23854611 (+) False XLOC_009892

Expression Profile

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