RNA id: CI01000304_17067366_17070132.mRNA


Basic Information

Item Value
RNA id CI01000304_17067366_17070132.mRNA
length 765
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000304_17067366_17070132
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17067330 ~ 17070132 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTTACTTCCTGCTGCAAAGGGTGAGAATGGAGCACCCTCACCTGCCGCTAACAAGCCGCATTTGAGAATAAATCACTTAAACAGCGCTGAAAGGAAGAATGGAAACTCTTTTAGAGAGAAGACAGGGGCTTTACGCAAACTACTAAAGAAACAAGTGGAGCTGGTGTATATTAGTGCACCACACCAAGTTCCTGCAATTCAAAACGAAACCAATCAGGAACCAGAGAAGTCAGCCAGAAGTGGTGAAGAAGACCAGAGTGGCTGGTGGTTCTCTGATGTCCAGGCACGAAGTTTTAATGCTAAACAGGAGTGTGAGAGCAGCCTGGGTCTGGAAGAGAGTATAGAGGCTGTGAAAACTGCAGTGAAGGATCTTGGCCCTTTCGATGGCATCCTGGGCTTTAGTCAAGGTGCTGCGCTTGTGGCCATGCTGTGTGCCCTGCAAGAACAAAAACTACAGCCTGATTTCAATTTCCGCTTTGCCATCCTGGTCGCCGGATTTCGCAGTGCCTGTTCCCAGCATCAGCGGTTCTACAAAGGACCGGTGATAACAATCCCCTCTCTGCATGTGTTTGGACAGGATGACCGTGTAATTCCAGAGGAGATGAGCCGAGATCTGCTGCCAGCGTTTGATGGAGCTCAAATCCTCTTTCATCCTGGTGGACACTTTGTTCCGGCGGCATCCTCGCACAGGCAGACATACCAAGACTTCCTCAAGAAGTTTCAGTAAGAGGATAAAAGAATATATGAGGGTTTCTGGAATAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492306 lncRNA downstream 5219 17061850 ~ 17062111 (-) True G428763
TU492266 lncRNA downstream 8177 17057985 ~ 17059153 (-) True G428724
TU492268 lncRNA downstream 10889 17054528 ~ 17056441 (-) True G428726
TU492263 lncRNA downstream 42042 17024068 ~ 17025288 (-) True G428721
TU492303 lncRNA downstream 54366 17010779 ~ 17012964 (-) True G428760
TU492351 lncRNA upstream 51460 17121592 ~ 17147286 (-) True G428807
TU492361 lncRNA upstream 66001 17136133 ~ 17136684 (-) True G428816
TU492384 lncRNA upstream 99199 17169331 ~ 17216801 (-) True G428837
TU492406 lncRNA upstream 149615 17219747 ~ 17220001 (-) True G428859
TU492407 lncRNA upstream 155446 17225578 ~ 17225877 (-) True G428860
CI01000304_17026143_17041443.mRNA mRNA downstream 25794 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17003708_17006278.mRNA mRNA downstream 60947 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_16929873_16945323.mRNA mRNA downstream 120503 16929448 ~ 16946827 (-) True CI01000304_16929873_16945323
CI01000304_16902774_16907628.mRNA mRNA downstream 158511 16902100 ~ 16908819 (-) True CI01000304_16902774_16907628
CI01000304_16874485_16876468.mRNA mRNA downstream 190862 16874275 ~ 16876468 (-) True CI01000304_16874485_16876468
CI01000304_17318429_17320775.mRNA mRNA upstream 248292 17318424 ~ 17320898 (-) True CI01000304_17318429_17320775
CI01000304_17332233_17338077.mRNA mRNA upstream 262101 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17348461_17354382.mRNA mRNA upstream 277947 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
CI01000304_17369357_17411120.mRNA mRNA upstream 299022 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17413669_17414667.mRNA mRNA upstream 343382 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
TU492202 other downstream 200092 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 286371 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 1805925 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2705438 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2779726 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 853731 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1167587 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1516310 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1519194 18589326 ~ 18591856 (-) True G429673

Expression Profile