RNA id: CI01000304_17348461_17354382.mRNA


Basic Information

Item Value
RNA id CI01000304_17348461_17354382.mRNA
length 2626
RNA type mRNA
GC content 0.35
exon number 2
gene id CI01000304_17348461_17354382
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17348079 ~ 17354622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATCCAGACTGAAGAAGGTAGAGTATAAACCTTGTGTTTCTTCTCTTTATTTCTAACACTTTTTTAACAGTAACTCATTTTATTAATTCAGTATGGTTATATCAAAGATCCACAATATTGTATTCATTAATGCACTGTGACTGAAATGAAATCATTATTTGAATATTCTCTTTTATTGAGTGCATTTTTATAACAGTTCTTCATCAGAGGTGACACAAAAAGCCAGACAGCAGCTATCATGAGCATCATGCAGTCAAACTCCTCTGCAAATGTGACCTTTATTCGTCCTGCAACATTTTTCATCAACGGCTTTTTTAATGTCCCACATGTGAAATACTACTATGTGTTCTTGTCTTTGGTGTATGTTGTGACTGTTTTAGGGAATTCATTTATCATGTATGTCATTTATTTGGCCCGCAGACTTCACACAGCCAAATACATTAGTGTTTTCCATCTGGCCCTTTCTGATCTGTGTGGAAGCTCGGCTTTGATTCCAAAAGTCATAGACACATTTTTATTCGAGCATCAGGACATCTCATATGAAGCGTGTTTGACATATATGTTTTTTGTGTATCATTTCATGAACCTGCAGTCTTTGACACTACTTGTCTTGGCTTATGACAGACTGGTTGCTATTTGTTTTCCTCTACGGTATCATGCCATTGTAACCAAAACAGCCATGTTTCTGATCATAGGCGTTATGTGGATTTTTTCTGTAGCATTTTTTTCTGTACTTGTAGGATCTGTGAATAGACTTTCTTTTTGTGGCTCTAATGTGCTTGATAGTTATTTTTGTGATTATGGCCCTATCTATAGAATAGCCTGCAATGATAATTCTGTAAATGTTTTGTTAGGTAAAATTTGCTATAGTCTCTTGATTTTTACACCACTAATTTTGATCTTCATCTCATATGTCTGCATTGCTTTAGTTTTGTTTAAAATTCCCCATGGTGTTGACCGGATCAAATCCATAAAAACCTGCACCTCACATCTCATGTTGGTGGCAATTTTTTATATCCCAATTTTAAGCAATAATATTGCATCTATCATAACACCTTTGCATCCAAACGCCCGGATAATTAACAATTCTCTCACTCAGACAATACCACCTATGCTGAATCCCATCATATACACTCTAAAGACAGAGGAGGTCATGCAATCCATTAAAGAGCTGTACAAACGAAGCAGGGTGAACACTACTCAGGAAAGAAATATGAAATGCAGTGACACAAAAAGCCAGACGGCAGCTATCATGAGCTCCATGCAGTCAAACTCTTCTGCAAATGTAACCTTTGTTCGTCCTGCAACATTTTTCCTCAACGGCTTTTCTAATGTTCCATATGTGAAATACTACTATGCATTCTTGTCTTTGGTGTATGTTGTGACTGTTTTAGGGAATTCATTTATCATGTATATAATTTATTTGGCCCGCAGACTTCACACAGCCAAATACATGGCTGTTTTCCATCTGGCCCTTTCTGATCTGTGCGGAAGCTCGACTTTGATTCCAAATATCATTGACACATTTTTGTTTGACCACCATGACATTTCATACGAAGTGTGCTTCGTAAATATGTTTTTTGTATATCATTTCATGAATCTGCAGTCTTTGACTCTACTTGTCTTGTCTTATGACAGACTGGTTGCTATTTGTTTTCCTCTACAGTATCATGCAATTGTTACCAAATCAGCCATGTTTCTGATCATAGGAGTTATGTGGATTTTATCTGGGACTTATTTTTCTGTACATGTGGGTTTGCTGAATAGACTTTCTATTTGTAGTTCTAATGTGGTTAATAGTTATTTCTGTGATTATGGCCCTGTCTGTAGACTAGCTTGTAATGATAATTCCTTAAATTTACTGATGGGAAAAATTTGCCTTGGTTTTCTGATTTGTCTGCCTCCAATACTGATCTTCATTTCATATATCTGCATTGCTCTGGCTCTGCTTAAGATTGCTCATGGTGCTGAACGAATCAAAGCCATAAAAACCTGCACCTCACATCTCATTTTGGTGGCAGTTTTTTATCTTCCACTTGTAGCCAATAATATTGCAGCTGCCACAGTACCGATCCATCCAAACTCCAGGTTAATTAACAATTCCTTGACTCAGATAGTACCACCTATGTTGAATCCCATCATATACACTCTAAAGACAGAGGAGGTTATGCAATCCATAAAAGAACTGTACAAACGAAGCAAGGTGAACACTACTCAGGAAAGAAATATGAAATTAAATTGAAGGAATTAAAAATTATTAAAAATAATTTATTCCTTATTTCTATAATTAACTTATTTTACTGTTGGATTGCTTTCGTTATCTGCTTGAATGAGACTTTGCCCTTCTGTATTTTGTAAAAAAAAGAAAATAGACATGCTATGAAACAACCCTTTATATTACATTTTTTTCTTTGAATGTCAAAAGGTTTTTGAAACACTCCTGACACTGTAAAGCTATAATATGTTCAATGTTTATTTATAACTACTCACTTATTCCCACTATTCTGTGCTAAGAAACATTAGCAGGTGTTTGTTCTTTTTGCACCTTTTTTTCTTGAGAGTGACCCCAGACTATATAATGCAGGTATGTGCTTCAGTGAACTTATTCCATAAATTATATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492471 lncRNA downstream 24524 17323213 ~ 17323555 (-) True G428912
TU492466 lncRNA downstream 31598 17316280 ~ 17316481 (-) True G428909
TU492410 lncRNA downstream 112383 17235442 ~ 17235696 (-) True G428863
TU492407 lncRNA downstream 122202 17225578 ~ 17225877 (-) True G428860
TU492406 lncRNA downstream 128078 17219747 ~ 17220001 (-) True G428859
TU492874 lncRNA upstream 168760 17523382 ~ 17523715 (-) True G429266
TU492823 lncRNA upstream 174696 17529318 ~ 17529711 (-) True G429216
TU492845 lncRNA upstream 209478 17564100 ~ 17564398 (-) True G429238
TU492827 lncRNA upstream 211080 17565702 ~ 17568817 (-) True G429220
TU492809 lncRNA upstream 305252 17659874 ~ 17704143 (-) True G429202
CI01000304_17332233_17338077.mRNA mRNA downstream 10002 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17318429_17320775.mRNA mRNA downstream 27181 17318424 ~ 17320898 (-) True CI01000304_17318429_17320775
CI01000304_17067366_17070132.mRNA mRNA downstream 277947 17067330 ~ 17070132 (-) True CI01000304_17067366_17070132
CI01000304_17026143_17041443.mRNA mRNA downstream 306543 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17003708_17006278.mRNA mRNA downstream 341696 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_17369357_17411120.mRNA mRNA upstream 14532 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17413669_17414667.mRNA mRNA upstream 58892 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
CI01000304_17488992_17490128.mRNA mRNA upstream 133502 17488124 ~ 17490494 (-) True CI01000304_17488992_17490128
CI01000304_17538160_17540583.mRNA mRNA upstream 183538 17538160 ~ 17540583 (-) True CI01000304_17538160_17540583
CI01000304_17571701_17576895.mRNA mRNA upstream 216602 17571224 ~ 17576895 (-) True CI01000304_17571701_17576895
TU492202 other downstream 480841 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 567120 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2086674 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2986187 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3060475 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 569241 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 883097 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1231820 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1234704 18589326 ~ 18591856 (-) True G429673

Expression Profile