RNA id: TCONS_00021920


Basic Information

Item Value
RNA id TCONS_00021920
length 1367
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id XLOC_009848
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20684940 ~ 20695517 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAATCGCGGCAAACATGTCTTGTGTCTTGTTGCGCCGGGTGTACGATAGGGCCCATAGACTCGAATTCTCATGCAAAACAGAAATGTACTGGAAAAAGTGCAGAACACAATGAAAATGTGTCGGGGGACACCAAAAAGTGACAAACTTTCTGCTTTCTGTTTACTGCACTTTGTGCAGACCACGTttctctatttgcatgtgttgtgaaacTTTGCTTGTGCGTGAGTTGTCAAATTGATGACGTCAAGTTTGCACCAAAGtttgctgggttcacaccaaatgtggaATTAAGTATTCAAGTGAGTAAATTGCTTACAATTTATTGCCACATGGTGCAAATGACACGGAATGCTCAATTGAAACATCCCATGAGTAAGCTTGTTATAagtaacatttaattaattacttttgttgCGCACTGTATTGTGTCTTTTCCTTTGTCCTGCCTTCTTCTCCCGTCTTCTTGTTTTTTGTTATCCCATAGGCTCTCATTTTTATGTGGTCcggctctgattggctgctggtcatGAAGAGCTATAAAACAGAACTTCCGACAGAGATCGAGGAGCTTAGTTTTGGTGCTATGGTAGCAGACTCACCTGAGAACAGCCCGGGGCGCTGCACACGTACGGCCTTTCCTGCTCCGAGTTCATCACTGTCACTGGCTCCTCATACACCTGAACACAAAGCAGAAATCAGGGGTGCCTCCAGGACTCCAAAATATAAAGACCCACGCTCACATTATGTCACTAACGCATTGTGTGCCAGAGATAGAAAACTCTGCGGTTCGctCACCATGAGAACAGGAATCCCCCGTTCAGTGCCATGATGCTGCTAAATGCCATGGATGACAGACTGACAATGGAATGGTATGCCAACCATTCAGTTTCATGCATACGAAGTGTAATCGGGCCACTTGTCTGACATTGCAGTTGATGCCGACATAGAGCCCACAACTACTGTCACCATAAGGAGTGTTTTACAGTTCAATTTATATCAGGCATTAATTTAGCAGGTGATGAGGTATAGTTTTAGGCATCACACCACTATAGCATTGTGAAAACATTAGTTTTAGCTCAAATAGAAAAGTGTGGTACCAGTTATGCCAAAGTTTTGGTTTGATTTCCAATTAAAGCAAGAACTTAATATGTGTAACTTCGAAGTAATACAAGTTACCTttgataaaaatgtgtaaatgaggTTGACAATGATAGAATACAGTGTggctgtttattttaaatgatttagtgGTGCACCTTAATCCTAAAAATGATTTGGtcatatatcaaaataaaatgactacttctgaatatgtttatttttaagctaagctaaaaataaataactttttaatgttTCACAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021919 lncRNA upstream 153168 20530125 ~ 20531772 (+) True XLOC_009847
TCONS_00019646 lncRNA upstream 875823 19807943 ~ 19809117 (+) True XLOC_009840
TCONS_00021706 lncRNA upstream 875867 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA upstream 875867 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00021918 lncRNA upstream 876032 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00019660 lncRNA downstream 175498 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019662 lncRNA downstream 175527 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019663 lncRNA downstream 178206 20873723 ~ 20874500 (+) True XLOC_009850
TCONS_00021921 lncRNA downstream 445531 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00021922 lncRNA downstream 938870 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00019656 mRNA upstream 169134 20496691 ~ 20515806 (+) False XLOC_009846
TCONS_00019657 mRNA upstream 170020 20496730 ~ 20514920 (+) False XLOC_009846
TCONS_00019654 mRNA upstream 379836 20294976 ~ 20305104 (+) False XLOC_009845
TCONS_00019652 mRNA upstream 445955 20198064 ~ 20238985 (+) False XLOC_009844
TCONS_00019653 mRNA upstream 450386 20220225 ~ 20234554 (+) True XLOC_009844
TCONS_00019659 mRNA downstream 43223 20738740 ~ 20800498 (+) True XLOC_009849
TCONS_00019661 mRNA downstream 175504 20871021 ~ 20889516 (+) False XLOC_009850
TCONS_00019664 mRNA downstream 200387 20895904 ~ 20897836 (+) True XLOC_009851
TCONS_00019665 mRNA downstream 209237 20904754 ~ 20907378 (+) True XLOC_009852
TCONS_00019666 mRNA downstream 214669 20910186 ~ 20913003 (+) True XLOC_009853
TCONS_00019658 other upstream 180075 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 380665 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 514112 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 980402 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 1556469 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019667 other downstream 217896 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 1003489 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 2702284 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 2911714 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 3142403 23837920 ~ 23854611 (+) False XLOC_009892