RNA id: CI01000304_17488992_17490128.mRNA



Basic Information


Item Value
RNA id CI01000304_17488992_17490128.mRNA
length 1876
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000304_17488992_17490128
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17488124 ~ 17490494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCTGGTACCTTGAATGAAGCCCCCCTTGTGTTATCACTTTGCTATGGTGGAGGGGTTTGCATGTCCTAGTGACCCTGGGAGCTACGTCAGCGGGAAACTAAGGTCCCTGACAGGTTCAACCATGCTGGATTGGTCTCAGGCAAAGGGACAGACTAAGGACAACACCTGGTCCTCCAGGTTGTGGGTTAGGCGTGGGGCCAACAGCCCCACCCTGTAAACACACCATTCTGTTACAGAAACCAAGACAAATGCAAATAACAACACCAAGCCTGGCAGTATGACCAACTCTGACAGAGGCCACCAGCAGGAGGTTAGGAGTGCGACAGACAGTCTGCTCAGCCCAAACAAAAGATCCACATTGGACCATGGAATATCCGAGCCATGTAGAATGGGAACCACTCTGTGAACGGATGATCAAAACATACTTCTATTCAAAGCACTGTAATCTCACCATCACACACCATATGGATATTGACATCAGTCCCCCAAACGAACACACGATCATCCAACATAAGGACATCCACAAGCTGACATGGAAATCACCTGATAGTAACACAATCAATCAGATCAACCACATCCTGTTCAACGTAAAGTTGCACAGGTCCTTCCAAGGTGTCAAAGTGTGCTTAGGTATGGATGTCAACAGTGACCACTACTTTGTGAAAATTACTATCAAATTCAATCTTTGTAAGATGTTGAGGAGTTTGTTGAGCATGGACAATACTGCAGCTAAGGGCATTAAAGCAAAACTAAGTAAAGCCCGCTGTGCATTCACTAGACTCCAGCCCAACTGGAAATCTGCACAATACAGCATCAGAACAAAGATGAGACTATATAACAGCAATGTCAAATCTGTTCTGCTGCATGGGTCAGAGTGCTGGCATGTCATTAAGTGTGACATGAAGAAGATTGAGGTATTCCACAACAATTGCATCAGGAGAATTTGCCATATCTTCTGGCCAGAGAGGATCTCAAATGCTGAGTTATATAAGAAGACCAACTCATAGCGCTGTAGAATGAAATGGCCTGGGCATGTCCTTCAGATGGACCAGAACCACATCTCGAAAGTAGCTATGAATTTGAGACCACCTAGGAAAAGTAAGCAAGGAAGGCCGAAAACAACTTGGAAGAGGAATGTAGAAGCTCAACTGAAAGAACCACACTTCTCATGGGGCGAAGGACAACATGCTGCCAATGATAGAACAAGATGGAAGCAGATTGTCACAGTCTTATGTTCCATAGGGAAATAAGAGGTATTAGTAAGTGTAACGTAGTGAGTAAATCTCACTCCCCTGGCCTCAAGAGGTGCACTAGCGAATGGCCTCTATTATGCTCATTTACAGGTTCTTAATTTAGTTTAGGGGTGTATTTTTTTTTATAATTTAAATTTACATTGTTGCTGCACCTGTTGCTTTCACCCTCTGTCTAAACGCTCTGTTTTAGTTTTCTTTAAAACTTTCAGCTCTATTGTGATTGGTCTATTGTCAGGAAGGTAACACTCCTTATACCATAACCGGTGGGTCCCGAGGCTTTCTGGGGCACTGAAAATCCTACCGTAACTATGCTAACTAACTTTAGTTAGTGCAGTTGGTGTGAGAGCAAATGTCCCTGACTGTGCAGCCTGTCATGGCCACCTCATCTTTATGATTTTTTTAGACACGTTAGCAAGTCGGGCAACACTCAGACACATTTCTAACTAGCATGCATCTTGTGGTGATCACTGGTGAAATATGCATAAATGGAATCATAGACTTTTATAACTAAAACTGTAAAATTTATTTATATTTTTATTAGATTTCTTTTTTTGTATAACAGTATTATGTGTTTGCCCTTTCAATTTCTTTAGACATCTGTACTTATGAAAATATAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU492774 lncRNA downstream 128032 17344902 ~ 17360092 (-) True G429172
TU492471 lncRNA downstream 164569 17323213 ~ 17323555 (-) True G428912
TU492466 lncRNA downstream 171643 17316280 ~ 17316481 (-) True G428909
TU492410 lncRNA downstream 252428 17235442 ~ 17235696 (-) True G428863
TU492407 lncRNA downstream 262247 17225578 ~ 17225877 (-) True G428860
TU492874 lncRNA upstream 32888 17523382 ~ 17523715 (-) True G429266
TU492823 lncRNA upstream 38824 17529318 ~ 17529711 (-) True G429216
TU492845 lncRNA upstream 73606 17564100 ~ 17564398 (-) True G429238
TU492827 lncRNA upstream 75208 17565702 ~ 17568817 (-) True G429220
TU492809 lncRNA upstream 169380 17659874 ~ 17704143 (-) True G429202
CI01000304_17413669_17414667.mRNA mRNA downstream 73216 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
CI01000304_17369357_17411120.mRNA mRNA downstream 76921 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17348461_17354382.mRNA mRNA downstream 133502 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
CI01000304_17332233_17338077.mRNA mRNA downstream 150047 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17318429_17320775.mRNA mRNA downstream 167226 17318424 ~ 17320898 (-) True CI01000304_17318429_17320775
CI01000304_17538160_17540583.mRNA mRNA upstream 47666 17538160 ~ 17540583 (-) True CI01000304_17538160_17540583
CI01000304_17571701_17576895.mRNA mRNA upstream 80730 17571224 ~ 17576895 (-) True CI01000304_17571701_17576895
CI01000304_17579139_17581078.mRNA mRNA upstream 88624 17579118 ~ 17581601 (-) True CI01000304_17579139_17581078
CI01000304_17582446_17582872.mRNA mRNA upstream 91750 17582244 ~ 17582872 (-) True CI01000304_17582446_17582872
CI01000304_17584110_17585466.mRNA mRNA upstream 93366 17583860 ~ 17585669 (-) True CI01000304_17584110_17585466
TU492202 other downstream 620886 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 707165 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2226719 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3126232 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3200520 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 433369 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 747225 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1095948 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1098832 18589326 ~ 18591856 (-) True G429673

Expression Profile