RNA id: CI01000304_17579139_17581078.mRNA



Basic Information


Item Value
RNA id CI01000304_17579139_17581078.mRNA
length 1204
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000304_17579139_17581078
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17579118 ~ 17581601 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACAACCTACATGAAAGAGGTTCATACAGTAACAATGTCTTAAATGAGCCTTTTTTTATTTATTTATTTATTTTTTTTAACATTTCTTATTCTAACACCCACAAATCCAACTCATTCTATCTGAAGGTTTTGCTATATGGGATCCCTGGTGCATTTTACTCAAACAAAATGGTTTTGACACACATGTTGACTTCTGACATAACAGTTCTCTAGATAGCTTTTGGGTTGTATTTTGTTAAATATTTTAAACAAAATAATTTAAGAGACCTGACTTTACACTCAGTGAGTCTGGAAATGTGCAGAGACATTTTAATGCTCCTCTAGATGATTTGCCAGAAAGTGATGTTTTACCCAACTTCACCCCTCTTCTGTTTATAAATGTTTTATTTAGCTCTGCATCATCTTATCATCCTCTCTGTTCTTTGACATGTTTAGGACTTCAATCAACCACACTCAAATCAGCTTCTGTAATGACGCTGTGAACTCAGGTCACATTGAAGCAACGTTCAGTTTGATTTCTCATCATGAATCTGACTGAGATTTGCGACAACGCTAAGAAAGGAAGAGAATATGCACTACTGGGGAACTATGATTCGTCCATGGTGTACTACCAAGGTGTTATACAACAGATCCATAAGCACTGTATGTCCCTCAGAGATCCTGCCCTGAAAGTCAAATGGCAACAAGTTCGGCAGGAACTGGCAGAGGAATATGAGCAGATGAAAAGCATCGTAAACACCCTGGAGAGTTTCAAGGTGGACAAACCAGTTGATTTCCCCAACCCTTTGCCTGAAGAGAGCCCAAGGGACCCTGCTGTCTGGCCTCCCCCAACCCCAGCGGAGCACAGGGGACCTGCCCAGGTGAAGAAGCCAGTCACTGTATCAAAGCCTCAGAGGAAAGAGTCACCTGGGATGCAGCATCGTGGACCTGTGGGGAGGGGTCAGCCGAACGTCAAATCAGATAGACCGAACACTCGTGATGGCCGTGGAAATAAAGCTAAGGAGGAAAAAAGTAAGAAGAATGCCCAGGAGGGTGCTGCTGATGTGGAACAGAGGAAGTTTGATGGCACTGGCTATGACAGCGATCTGGTGGATGCACTAGAGAGAGATATTGTGTCCCGGAATCTCAATATCCACTGGTATTGTGCCATTTTACTACTAGTTTTACTTTTCAAGTGCTTATGATTATATAGTTTACAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU492827 lncRNA downstream 10301 17565702 ~ 17568817 (-) True G429220
TU492845 lncRNA downstream 14720 17564100 ~ 17564398 (-) True G429238
TU492823 lncRNA downstream 49407 17529318 ~ 17529711 (-) True G429216
TU492874 lncRNA downstream 55403 17523382 ~ 17523715 (-) True G429266
TU492774 lncRNA downstream 219026 17344902 ~ 17360092 (-) True G429172
TU492809 lncRNA upstream 78273 17659874 ~ 17704143 (-) True G429202
TU492831 lncRNA upstream 137345 17718946 ~ 17794447 (-) True G429224
TU492915 lncRNA upstream 239159 17820760 ~ 17821223 (-) True G429300
TU492916 lncRNA upstream 240558 17822159 ~ 17822403 (-) True G429301
TU492918 lncRNA upstream 243841 17825442 ~ 17825664 (-) True G429303
CI01000304_17571701_17576895.mRNA mRNA downstream 2223 17571224 ~ 17576895 (-) True CI01000304_17571701_17576895
CI01000304_17538160_17540583.mRNA mRNA downstream 38535 17538160 ~ 17540583 (-) True CI01000304_17538160_17540583
CI01000304_17488992_17490128.mRNA mRNA downstream 88624 17488124 ~ 17490494 (-) True CI01000304_17488992_17490128
CI01000304_17413669_17414667.mRNA mRNA downstream 164210 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
CI01000304_17369357_17411120.mRNA mRNA downstream 167915 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17582446_17582872.mRNA mRNA upstream 643 17582244 ~ 17582872 (-) True CI01000304_17582446_17582872
CI01000304_17584110_17585466.mRNA mRNA upstream 2259 17583860 ~ 17585669 (-) True CI01000304_17584110_17585466
CI01000304_17609266_17610594.mRNA mRNA upstream 27642 17609243 ~ 17610594 (-) True CI01000304_17609266_17610594
CI01000304_17613042_17613658.mRNA mRNA upstream 31065 17612666 ~ 17614053 (-) True CI01000304_17613042_17613658
CI01000304_17614848_17642103.mRNA mRNA upstream 33124 17614725 ~ 17642103 (-) True CI01000304_17614848_17642103
TU492202 other downstream 711880 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 798159 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2317713 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3217226 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3291514 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 342262 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 656118 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1004841 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1007725 18589326 ~ 18591856 (-) True G429673

Expression Profile