RNA id: CI01000304_18007357_18007779.mRNA


Basic Information

Item Value
RNA id CI01000304_18007357_18007779.mRNA
length 968
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000304_18007357_18007779
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 18007055 ~ 18008022 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCACCACTCGCAGAGATATAACATTTACGCGGAACACTGCTGGTGAGTATTGCAGGGAACGATTTCAGCTTTAAATTATTTCCTTGCACTGATGCAAAGTGTTCAAACATTAAATTCTGACTGATGCTTCTAGGAATATAAATTAATCTTTTGATGATATTTGTGTTAAACAACTGTGGAGCTAGTAAAAAAAGAAGTGACATGATTTTTGTGTTTTGGTATGTTGTTCTCAGATCAGAGAAATGGCTGTAAGAGTGGACAGCTGTGCGGTGCTGCTGGTTGTGATGTTTGGCTGTATGCTGGTCCAAATTGAGAATGCCAATGTGACGAACAGTACCACTTCATTTAACTACACCAACAGCACAAGCCAAAACATGAATGGTACTACTTCATCCGGCTTCACCAGTTCCACATCAGTCAACTCTAAGAATGGCACTAATCAGAATGCGAACGGCGCTAACCAGAACACGAATGGCGCCAATTCAGCCAGTTCCCCCGGCAGCACAAATGAGATGAACAACACTACTTCATCCAGCTTCAACAACAGCACAAACCAAACAGTCAGCACCTCTGTTAGCAGTTCCTCCTCTTCCTCCATGACTAGCTGCTTCAAACTTCTGCTGCCTGTGTTCACGGCTCTATGCTTTCTACACATGATACAGTGACCATCAATCTCCCTTGTGCTTTGAAGGTAGACAATCCTGTAAGATTCTTCAGAGACTTAATAGAGTGTTTCTGAAATGCTACAAATGAAATGTAGATGTTGTGCAGCTTGTAACAAACAGCTTTTTGCTTAACATTATATTTCAAATATAAAAAATATTGTTACTATTCACAACCATTATTTAGCAGGCAGTCAGGGTATTTTCAATTTATCGCTGTAAAACGCTGTAATATCTTCATAGATTTCCCTTTGTTGATTAAATCATTTGTTATTAGTTAACTGGTTGTTCTCAGAAGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493014 lncRNA downstream 9784 17995452 ~ 17997271 (-) True G429391
TU493003 lncRNA downstream 27819 17978929 ~ 17979236 (-) True G429382
TU492937 lncRNA downstream 90938 17915911 ~ 17916117 (-) True G429322
TU492936 lncRNA downstream 91161 17915591 ~ 17915894 (-) True G429321
TU492931 lncRNA downstream 107160 17899666 ~ 17899895 (-) True G429316
TU493002 lncRNA upstream 27465 18035487 ~ 18035987 (-) True G429381
TU493020 lncRNA upstream 224690 18232712 ~ 18234603 (-) True G429396
TU493158 lncRNA upstream 283482 18291504 ~ 18291749 (-) True G429525
TU493352 lncRNA upstream 323714 18331736 ~ 18332032 (-) True G429697
TU493336 lncRNA upstream 339126 18349995 ~ 18357526 (-) True CI01000304_18356754_18371739
CI01000304_17837247_17882808.mRNA mRNA downstream 123095 17837247 ~ 17883960 (-) True CI01000304_17837247_17882808
CI01000304_17776984_17798369.mRNA mRNA downstream 208686 17776913 ~ 17798369 (-) True CI01000304_17776984_17798369
CI01000304_17761838_17774880.mRNA mRNA downstream 232175 17761550 ~ 17774880 (-) True CI01000304_17761838_17774880
CI01000304_17753888_17759116.mRNA mRNA downstream 247939 17753723 ~ 17759116 (-) True CI01000304_17753888_17759116
CI01000304_17748958_17752035.mRNA mRNA downstream 255020 17748386 ~ 17752035 (-) True CI01000304_17748958_17752035
CI01000304_18010568_18011800.mRNA mRNA upstream 2232 18010254 ~ 18011834 (-) True CI01000304_18010568_18011800
CI01000304_18018841_18019759.mRNA mRNA upstream 10819 18018841 ~ 18020494 (-) True CI01000304_18018841_18019759
CI01000304_18021327_18022049.mRNA mRNA upstream 13029 18021051 ~ 18022109 (-) True CI01000304_18021327_18022049
CI01000304_18343532_18348936.mRNA mRNA upstream 335259 18343281 ~ 18349633 (-) False CI01000304_18343532_18348936
CI01000304_18356754_18371739.mRNA mRNA upstream 348672 18356694 ~ 18373932 (-) False CI01000304_18356754_18371739
TU492948 other downstream 82371 17923863 ~ 17924684 (-) True G429331
TU492202 other downstream 1139817 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 1226096 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2745650 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3645163 14361448 ~ 14361892 (-) True G427423
TU493132 other upstream 229697 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 578420 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 581304 18589326 ~ 18591856 (-) True G429673

Expression Profile