RNA id: TCONS_00019662


Basic Information

Item Value
RNA id TCONS_00019662
length 947
lncRNA type retained_intron
GC content 0.48
exon number 7
gene id XLOC_009850
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20871015 ~ 20889516 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGTAAGTCGAAGGTCAAGACCGAAGCAGCATGGCCGCTCTGTTAAGGGTCTCGCGGTGTCTGGTAGGAAAGTGTAACAACCATGTCAACGCCGTGCAGGTCTCCATCAGGTCAATGGCTTCTAAAACCCAGGTGGGCTTCATTGGCCTGGGGAACATGGGCAACCCAATGGCAAAGAACCTCATAAAACATGGATATCCAGTGATCGCCACAGATGTATTTCCAGAATCTTGCAAAGAGCTGCAGGAACTCGGAGCTCAGATCCTGGATAGCCCTGCAGATGTAGCAGACAAGGCAGATCGCATCATCACAATGCTTCCCTCCAACCCCAATGTTGTAGATGTGTATACCGGACCAAATGGTATTTTAAAGAAAGTGAAGAAGGGGTCTCTACTCATTGATTCCAGCACTATTGATCCAGCTGTCTCTAAAGAGATGGCAGTTGCAGCAGAGAAACTGGGTGCTGTTTTCATGGATGCCCCGGTGTCTGGAGGTGTTGGTGCTGCCACTTCTGGTAAGCTCACTTTTATGGTTGGTGGGCCAGAGGAAGAGTTCAATGCAGCCAAGGAGCTTCTGAGCTGTATGGGTGCTAATGTGGTTTACTGTGGCCAAGTTGGCACTGGACAGGCAGCTAAAATCTGCAACAATATGCTGCTGGCCATTGGGATGATTGGAACAGCAGAGACCATGAACTTGGGAATCAGATTAGGACTTGACCCTAAACTTCTTGCAAAGATTTTGAACATGAGCTCTGGCCGCTGTTGGTCAAGTGACACCTATAATCCTGTCCCAGGTGTGATGGAGGGAGTGCCCTCAGCAAACAACTACCAGGGCGGTTTCGGCACTACACTAATGACCAAGGTTGTCTTTAATGTATTCATTGCTTTGGAACGTATAACAGTACAGATATTTTTGGCATTTTATGGTGTTTATTAAAGAAGTGTTT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0044091 membrane biogenesis biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0022610 biological adhesion biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0001765 membrane raft assembly biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031579 membrane raft organization biological_process
GO:0070836 caveola assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0060429 epithelium development biological_process
GO:0009083 branched-chain amino acid catabolic process biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0040007 growth biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0044854 plasma membrane raft assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0008015 blood circulation biological_process
GO:0044857 plasma membrane raft organization biological_process
GO:0071709 membrane assembly biological_process
GO:0003008 system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0006574 valine catabolic process biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005912 adherens junction cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008442 3-hydroxyisobutyrate dehydrogenase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005231 excitatory extracellular ligand-gated ion channel activity molecular_function
GO:0098960 postsynaptic neurotransmitter receptor activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0099529 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1582 Predicted to enable 3-hydroxyisobutyrate dehydrogenase activity. Predicted to be involved in valine catabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be active in mitochondrion. Is expressed in mesenchyme pectoral fin and myoblast. Orthologous to human HIBADH (3-hydroxyisobutyrate dehydrogenase).

Ensembl:

ensembl_id ENSDART00000132407

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021920 lncRNA upstream 175527 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021708 lncRNA upstream 175527 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00021919 lncRNA upstream 339272 20530125 ~ 20531772 (+) True XLOC_009847
TCONS_00019646 lncRNA upstream 1061927 19807943 ~ 19809117 (+) True XLOC_009840
TCONS_00021707 lncRNA upstream 1061971 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00021921 lncRNA downstream 253624 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00021922 lncRNA downstream 746963 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00019681 lncRNA downstream 811571 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00019683 lncRNA downstream 811665 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA downstream 811671 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019659 mRNA upstream 70546 20738740 ~ 20800498 (+) True XLOC_009849
TCONS_00019656 mRNA upstream 355238 20496691 ~ 20515806 (+) False XLOC_009846
TCONS_00019657 mRNA upstream 356124 20496730 ~ 20514920 (+) False XLOC_009846
TCONS_00019654 mRNA upstream 565940 20294976 ~ 20305104 (+) False XLOC_009845
TCONS_00019653 mRNA upstream 636490 20220225 ~ 20234554 (+) True XLOC_009844
TCONS_00019664 mRNA downstream 8480 20895904 ~ 20897836 (+) True XLOC_009851
TCONS_00019665 mRNA downstream 17330 20904754 ~ 20907378 (+) True XLOC_009852
TCONS_00019666 mRNA downstream 22762 20910186 ~ 20913003 (+) True XLOC_009853
TCONS_00019668 mRNA downstream 27895 20915319 ~ 20917584 (+) True XLOC_009855
TCONS_00019669 mRNA downstream 39249 20926673 ~ 20929183 (+) True XLOC_009856
TCONS_00019658 other upstream 366179 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 566769 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 700216 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 1166506 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 1742573 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019667 other downstream 25989 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 811582 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 2510377 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 2719807 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 2950496 23837920 ~ 23854611 (+) False XLOC_009892

Expression Profile

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