RNA id: TU480040


Basic Information

Item Value
RNA id TU480040
length 212
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G417904
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 26033 ~ 26244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGCTCAGGGTCTGTGGAGGACTCATCAGCTCTCGTGGCACATAAATTGCCTGGAGATGATGGCGGTCTTCAATGCGTTGAAGTTCTTCCTTCCAGACCTGAGGGGCCATCATGTGCTTGTCAGGACAGACAACACATCAGTGGTCTCTTATATAAATCGACAGGGGGGTCTGCGGTCGCGTCCACTATGCAAACTGGCGCACCAGATCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480043 lncRNA downstream 19293 45537 ~ 45789 (+) True G417907
TU480033 lncRNA downstream 60716 86960 ~ 89259 (+) True G417900
TU480075 lncRNA downstream 108602 134846 ~ 135133 (+) True G417937
TU480077 lncRNA downstream 110890 137134 ~ 137405 (+) False G417939
TU480078 lncRNA downstream 110890 137134 ~ 137631 (+) True G417939
CI01000304_00047400_00073206.mRNA mRNA downstream 20078 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00292894_00306187.mRNA mRNA downstream 266650 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00308220_00310793.mRNA mRNA downstream 281429 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00315935_00342330.mRNA mRNA downstream 288498 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 344089 370333 ~ 420755 (+) True CI01000304_00370333_00419672
TU480131 other downstream 200459 226703 ~ 227853 (+) True G417987
TU480224 other downstream 531848 558092 ~ 564451 (+) True G418059
TU480282 other downstream 846426 872670 ~ 875249 (+) True G418116
TU481280 other downstream 2066250 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 4277092 4303336 ~ 4303832 (+) True G420445

Expression Profile