RNA id: TU480472


Basic Information

Item Value
RNA id TU480472
length 212
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G418295
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 26033 ~ 26244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGATCTGGTGCGCCAGTTTGCATAGTGGACGCGACCGCAGACCCCCCTGTCGATTTATATAAGAGACCACTGATGTGTTGTCTGTCCTGACAAGCACATGATGGCCCCTCAGGTCTGGAAGGAAGAACTTCAACGCATTGAAGACCGCCATCATCTCCAGGCAATTTATGTGCCACGAGAGCTGATGAGTCCTCCACAGACCCTGAGCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480478 lncRNA upstream 19259 45503 ~ 45725 (-) True G418300
TU480492 lncRNA upstream 105522 131766 ~ 131982 (-) True G418314
TU480468 lncRNA upstream 151881 178125 ~ 251292 (-) True G418291
TU480453 lncRNA upstream 259071 285315 ~ 342503 (-) True G418276
TU480448 lncRNA upstream 266662 292906 ~ 306910 (-) True G418271
CI01000304_00088915_00116828.mRNA mRNA upstream 61920 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00140443_00163606.mRNA mRNA upstream 113446 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00167148_00268194.mRNA mRNA upstream 140904 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00348539_00351333.mRNA mRNA upstream 322251 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00670372_00671143.mRNA mRNA upstream 643032 669276 ~ 671143 (-) True CI01000304_00670372_00671143
TU481692 other upstream 2203140 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 2203140 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 2236258 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 2236494 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 2236848 2263092 ~ 2265185 (-) False G419354

Expression Profile