RNA id: TU480033


Basic Information

Item Value
RNA id TU480033
length 2186
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G417900
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 86960 ~ 89259 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCAACTCTCCTTAAAAATGTAATGGTTAAAACATTCTACATAAATGTTTACAGGATTCTACATAAGCATCTACGTAAGTGTTTACAGGATTGACCCTTCAAATTTTTTAGTATCATAGCTAAAATATCTTATTTTGAAAAGCAAATGTACTTGAGGCATTTCTACCATGTTACCAATAAGTGAAGATTTATGCATAAAGTAACATGTCGTTGTTTTTTAAGAAACAGCTTGTGATTCAGCATCTATGCAAGATGCACTAAAGCACTTTCTGTGCTTTAGGCACACAAAGTACCTTCATGATATTAAAGTGAAAAGAACGACATTTTCTTTGATACCAGTTCTCGATGTAATGCAGAATATTTACATGTACGCTTATTCTACAATAAAGTTTTTTCTAGAGCGTTAACAAAAGCAGCGCATTTTAAGCATCACATTACATTATCTAGACTTACACACAAAGTAAAAAGGGCCAAGATGAAGCATTCGAATACATAAATGAGATTGAACATTCAAGTGCATTTAAACATTCCCTTTAAACGACAGGTGTAATTGGACATGAAAATGGGTCCGAAAACGAATGAAAAACTGAGCTGTCTGGCCATATTAGTGTATTAAATTCACAACATGATATTTATGAATTCTTACACATTCTTAAAAGTTTAAGACATGGCAATATGTTACAATGTGTATTTTAAAGAAATAATGTCTATATACAGCAAGACTGCCATCGTTGCAAAGTATTTAAGATATATTTCCAAAGATTGTTTCCAATACATAACATGTAAATTATGTGCAGATAATCAGTTGACTTCAATATACAATTTAAAATTGTGACAAGGAATAATTTTAGTGACAAACCAGTATGTACTGTAGAAACTTGACAGGGACAAATGCAGAGAGCACCCTAGCGAACCAGTGTATGTCACATCCTCTGTCAAACACGCTATGCTGTTGGACTGAGCATTTTTGATCATGATCAAAAATCACATTTCCATCCAGATGAAGCCATCCAATACAACAAACAGAAAAAACAACAACATAAAATTACAAGATAATAAAAAAATGTGCTGATTTAAAGCAGGCTTTCTAATGAGCAAATCCACTTTGGAAGACTAGGATATGTTAACGCTATTTCACAAATTAATAAAATAGTTAAATTCACAAACCGACAGAGTTGGTAAATGTAAAGTAATGTGTAATAATTTAATTGAGTTCAGTTTTTACAAAAATCAATATCAGCAAATGTAATGGAAGGAATTAAGAGGCTTTTTGACTTGCAGTCAGTGAGGCAAGACAAATAAAATGTGGAGCTGCACCTTTTTTCCACAAAGTGAAAGTCACTTGAGACAAATGTTGTTTCAACACTGACATTTTAAAAAAAATATCTTCTGTTTTCCACAGAAGAAAGAAAGGCATACAGGTTTGAAACATTATGAAGGTGAGTGAATGATGACAGAATTTTCAGGGCACACGGATGTTACAAGGTCTGCGTTTTCTGTTGGTTCTGTCCCTGCTTTGAGGTTGGCAAAGAATCAATTCTTTAGGAGAAAAAAAATATTAAATGCAGTCAAAGCTAGCACAATATGTGTCACAACACAGAGCCACAGGAAGAACAAGAAATAAAAAAATAAGCACATTGCATAGTGTATAAGCTCATTTTAGTGTTTTGTGAAAGCATGCGTAATGTTTAGTGTCTTTAGGGTGTGTAGTCCACATAACATCCACTACATTGAATGCTAACGTAAACAAACGTGGTAAAAGTAAATGAAAATGTAGTGTTAAATAATGGAATATCTATCAGTCTAACTTGCGTGCCTTCTTGTATTCTTCATATTGTGTGCTAACTGCATGAGGATAACTGAAGTGACATGAACGACCCTCTACTTTTAGGCCCATAAAAACACTTGAGCCGACCCGGCGGGCGACAGAATCAGCAGGTGGGCCGGGCAGACAAGAGCTGCTACTGTTGGGAGGTCGAGCATCCAAACACTTCTGATACCTCAGCTGTAAATGATGGAAGATATAATTTAAACTCATTTAAATAATATAATTTAAAAACATTTTAAAAGAACAGCAACATATTTCAACTTCAACTAGCTATTAGATTATACAAAGTCTGTACAGCCATGGCCAAAAGTATTGGCAGTGACATAAATTTTGTGTTTTCTTGCTTATTTTGTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480043 lncRNA upstream 41171 45537 ~ 45789 (+) True G417907
TU480040 lncRNA upstream 60716 26033 ~ 26244 (+) True G417904
TU480075 lncRNA downstream 45587 134846 ~ 135133 (+) True G417937
TU480077 lncRNA downstream 47875 137134 ~ 137405 (+) False G417939
TU480078 lncRNA downstream 47875 137134 ~ 137631 (+) True G417939
TU480081 lncRNA downstream 49954 139213 ~ 139451 (+) True G417941
TU480082 lncRNA downstream 50273 139532 ~ 139853 (+) True G417942
CI01000304_00047400_00073206.mRNA mRNA upstream 13622 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00292894_00306187.mRNA mRNA downstream 203635 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00308220_00310793.mRNA mRNA downstream 218414 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00315935_00342330.mRNA mRNA downstream 225483 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 281074 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00424703_00434890.mRNA mRNA downstream 335444 424703 ~ 435066 (+) True CI01000304_00424703_00434890
TU480131 other downstream 137444 226703 ~ 227853 (+) True G417987
TU480224 other downstream 468833 558092 ~ 564451 (+) True G418059
TU480282 other downstream 783411 872670 ~ 875249 (+) True G418116
TU481280 other downstream 2003235 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 4214077 4303336 ~ 4303832 (+) True G420445

Expression Profile