RNA id: TU480078


Basic Information

Item Value
RNA id TU480078
length 498
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G417939
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 137134 ~ 137631 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTTAATGCCAATTTTTAAATTTTTAATGCCATATATATGTCGGTAAATGTTGATAGATGACATCAAAAAGCAATTAGAATATTCATCATGTCATTGTTGCATTCGCATTCTGCCAAGTGTCAGCCCTTTACATTTGTTTGCTTCTCTGGTGCTACCCTTTTTGCTCACATAATATATTTTAATACAGCCAAATTCCCAATAAAATTGTTTCATCTATATATTTTTCTGTTTTTGTTGTCAGAAAATATGCAATGGTGCCTGAAACGTGGCCCATCAAGACTACATACAGGGCTCGACATACAGCCTTTTCATTCACTTGTACGATTCTTGTATGATTCATGTAAAATGTATGATTCATCTTTCATTTTAAATTCTTAAATTCGATCAATAAATTTAATTAGAATAAGACACTAAGGGCTGTTACCAATCAAATTAAATAATTTACGAATTTACAAAAAAAAAAAAAAAAATTACAACTGCATCAAATAATGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480075 lncRNA upstream 2001 134846 ~ 135133 (+) True G417937
TU480033 lncRNA upstream 47875 86960 ~ 89259 (+) True G417900
TU480043 lncRNA upstream 91345 45537 ~ 45789 (+) True G417907
TU480040 lncRNA upstream 110890 26033 ~ 26244 (+) True G417904
TU480081 lncRNA downstream 1582 139213 ~ 139451 (+) True G417941
TU480082 lncRNA downstream 1901 139532 ~ 139853 (+) True G417942
TU480083 lncRNA downstream 2512 140143 ~ 140471 (+) True G417943
TU480084 lncRNA downstream 3187 140818 ~ 141241 (+) True G417944
TU480085 lncRNA downstream 3923 141554 ~ 141798 (+) True G417945
CI01000304_00047400_00073206.mRNA mRNA upstream 63796 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00292894_00306187.mRNA mRNA downstream 155263 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00308220_00310793.mRNA mRNA downstream 170042 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00315935_00342330.mRNA mRNA downstream 177111 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 232702 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00424703_00434890.mRNA mRNA downstream 287072 424703 ~ 435066 (+) True CI01000304_00424703_00434890
TU480131 other downstream 89072 226703 ~ 227853 (+) True G417987
TU480224 other downstream 420461 558092 ~ 564451 (+) True G418059
TU480282 other downstream 735039 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1954863 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 4165705 4303336 ~ 4303832 (+) True G420445

Expression Profile