RNA id: TU480082


Basic Information

Item Value
RNA id TU480082
length 322
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G417942
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 139532 ~ 139853 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAATAAGATTAGAAAAAAAAAATTATCTTATAATGGTAAAAATTACTGTAGAAATTAATTTAAAGGGGCAAATATCGCCCCTGTAATGGGAAAGTTAGTGTCTGTTATTGATCAGAAAGTGCTCCTAAATTTTTGACTGTGCTCCTAATTTTTTTTTTATTAGGAGCACTTGAAAATTGAAAATTTAGCATAGAGCCCTGGCTTTCTCTGCATATTTCGGAATGAACCGTCTGTAGTAGCTTGTGAGGCCGAGAAATCCTCTCACTTGTTTCATATCTGTCTGCGTTCTGAAATCTGTGACTGCTTTTTCGGGTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480081 lncRNA upstream 81 139213 ~ 139451 (+) True G417941
TU480078 lncRNA upstream 1901 137134 ~ 137631 (+) True G417939
TU480077 lncRNA upstream 2127 137134 ~ 137405 (+) False G417939
TU480075 lncRNA upstream 4399 134846 ~ 135133 (+) True G417937
TU480033 lncRNA upstream 50273 86960 ~ 89259 (+) True G417900
TU480083 lncRNA downstream 290 140143 ~ 140471 (+) True G417943
TU480084 lncRNA downstream 965 140818 ~ 141241 (+) True G417944
TU480085 lncRNA downstream 1701 141554 ~ 141798 (+) True G417945
TU480086 lncRNA downstream 2237 142090 ~ 142486 (+) True G417946
TU480104 lncRNA downstream 20241 160094 ~ 161259 (+) True G417960
CI01000304_00047400_00073206.mRNA mRNA upstream 66194 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00292894_00306187.mRNA mRNA downstream 153041 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00308220_00310793.mRNA mRNA downstream 167820 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00315935_00342330.mRNA mRNA downstream 174889 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 230480 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00424703_00434890.mRNA mRNA downstream 284850 424703 ~ 435066 (+) True CI01000304_00424703_00434890
TU480131 other downstream 86850 226703 ~ 227853 (+) True G417987
TU480224 other downstream 418239 558092 ~ 564451 (+) True G418059
TU480282 other downstream 732817 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1952641 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 4163483 4303336 ~ 4303832 (+) True G420445

Expression Profile