RNA id: TU480086


Basic Information

Item Value
RNA id TU480086
length 397
lncRNA type intronic
GC content 0.44
exon number 1
gene id G417946
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 142090 ~ 142486 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCAAAGCAGCTTTACAGTGATAAATGGTATATAATTTTGGCTGCACAGCAGCTCTTAAAGAAAATGCTGTCAATGTAGGCAGATGCAAAGCACTGTTGAATATCAAATGTCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCAACAGGTGACATCAGGTGGCAAATAGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTCTGGCCAACAGTGCTTTGTTACGATTCAGGTAGCTATCATAAGCCCGATAGGATCGCAACATTCAAAGTATTTATTCCAGTTCAATCCAGTTCAATCCATCGTATTCATCACGCCGGTATGGATGGTTTGTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480085 lncRNA upstream 292 141554 ~ 141798 (+) True G417945
TU480084 lncRNA upstream 849 140818 ~ 141241 (+) True G417944
TU480083 lncRNA upstream 1619 140143 ~ 140471 (+) True G417943
TU480082 lncRNA upstream 2237 139532 ~ 139853 (+) True G417942
TU480081 lncRNA upstream 2639 139213 ~ 139451 (+) True G417941
TU480104 lncRNA downstream 17608 160094 ~ 161259 (+) True G417960
TU480106 lncRNA downstream 20060 162546 ~ 163329 (+) True G417962
TU480107 lncRNA downstream 21734 164220 ~ 164672 (+) True G417963
TU480036 lncRNA downstream 26034 168520 ~ 268210 (+) True G417901
TU480128 lncRNA downstream 80529 223015 ~ 223919 (+) True G417984
CI01000304_00047400_00073206.mRNA mRNA upstream 68752 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00292894_00306187.mRNA mRNA downstream 150408 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00308220_00310793.mRNA mRNA downstream 165187 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00315935_00342330.mRNA mRNA downstream 172256 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 227847 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00424703_00434890.mRNA mRNA downstream 282217 424703 ~ 435066 (+) True CI01000304_00424703_00434890
TU480131 other downstream 84217 226703 ~ 227853 (+) True G417987
TU480224 other downstream 415606 558092 ~ 564451 (+) True G418059
TU480282 other downstream 730184 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1950008 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 4160850 4303336 ~ 4303832 (+) True G420445

Expression Profile