RNA id: TU480468


Basic Information

Item Value
RNA id TU480468
length 3724
lncRNA type sense_over
GC content 0.38
exon number 3
gene id G418291
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 178125 ~ 251292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGACTCTTAATGCATCGTGTTTCCTTCTGAAGCACCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCACAGTTGTCCTCCATGTGAAAAGATGGATCTCAAAATCATTCAGTCACTGTTGTAAAGGGTTCAAAAAAGAGTTTTTGGGACCTGGAGATTTTTTCTGAAGAGCAGAGCTCAGTTTAACTGCTCAGGACAAACAAGGGACTCATGAACAACCATCACGCAACAAAAAAACAGTCGTAGATCATCCAGGTAACCAAACACAGTATTAAGAATCAATGGTTCACAAAATATATATATATATATANNNNNNNNNACACACACACACACACACACACAGTGCACAGCATAAATGAGTACACCCCCTCTGAACAAATACAAAAGATGTATTTTCTTAATGATCACTTACACAATTCATGGAAATATGGCAAAATTTAAATGTATTAAACATACATTTCATAAAAACAGAGAAATATTCCATTAATATCAATAAAATAAGTAAATGATCCAATTTTGTTTAAATGAAGGGCTGCAGAAATGAATACACCCTACATCTAATTCAACAAATTTTAAGATTGGGTGAAATACGTGTCCACAGAAGGTTTTTCACCTTGGGAGAATGCATATCATCGTCATGTTGAAAAAATGCCCAACAACACAGGGAATGAGGATCAACACAGGGAGTGTAGCATCTTCTGTTTTAAGTTTTTGTATTACATCACACAGTGGTGTGTGTGAATTAATGACAGCACTGATAAAGCACAACTCCCTCACACCTCCAGCACTCATACATCCCTATATAAGAGCTTTACTACCACTGAACTTCACTGTGGGAACCAGGTTCTTCTCACTCCTCTAGCAACACCATAACATTTTGGATGCTGTTGGATCCAAAATGATTGACTTTGGTCTCATGAGACCAGAATATGGATTCCTAGAAGTCTATATTTTGTAAATATGGACCTTGGAAAAGGCTAATTGACTTTGTGCCTTGGCTACAGTGGGGTAGTTCCAGTGTGGACAACAACCATGCATGTCACTTCTGCAGGCTGCATCTTACTCTGAGATAAACAGTCAATCTTCATAGCTTTTGCTTGCTCTGAGACACTCACTTGGTATTTCTCCTGCTCTTTGTCTAGCAAAAAACCCACTCATCACTAAATGAAAGCTTAAAAATGAAGGCGTGATTATTTCAGGGGCCTTGTCACAAGCACCATAACTTTTGGCGCTCTAGCAGTTAATAAACAGAACTGCATGCGTCTTGTGGAAGAACGTTGTAGCCGGAGCTACTTCTCTCTGTTTATGTCTATGATGAGTCACACAGTTACTGTGTTACTCCGCAGCGATTCCTACCAGACCAGTCTAAAATAGTCTGAATATAAACAACTTATTATATAGGTGTACCATAATGATTCAGGGTAAGACAAAAACACAGTTTGGAAAATGGATTCATGTTGTACATTCTCATTATATAATTTTTGTAAATTTTGAACACAAAAAAAGTTACGGACAGCAGCTTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAAGTACTCACCATCATGTCGTTCCACACCCGTAAGACCTGCGTTCATCTTCGGAACAAAAATTAAGATATTTTTGATGAAATCCGAGGGTATCTGATCAACACATAGGCAGCAACGTCATTGTACCTTTTGACGTCCAGAAAGGTTGTTTAAAAACATGGTTAAAACAGTCAATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGATAAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAATGACTTTATTCAACAAATTGAACCGTTGTCATAAGTAGTGAAATCAGTGCAGGCTTCCTTGTTTGCGTTCGAATTTTATTTAGTTTTATTTCGTAACTTTCAGGAGGGTGTACTCATCTTTGCAACACAACACTTTTATCACTTTGATAAGGAAATCTTATTTTCCTAAATAATTTTGACATGCTTCTTTGGTAATTGATCATGCAGACTTGATGGAACATTATATCTCTAAAGAACCCTAACATGTCCTCTAAGTAAAGAGTAATTGCTGAATTTGTTAAATTTCCGAGGGGGTGTACTCATTTATGCTGTGCACTGTGTATATATATCACCTGGCATGTCTGTTCAATGAAATGGGGGACTGAAGTGGGTGTGGCCTTTTGTTTGGGGGCGGAGCAGTCCTTTCAGTAAGCAAAGCCACATGGGACACAGAGTCTGTCCACTCCACACGGAGACGCGTTTAGCTGTATTTGCAAAAAAAAATTATCGTATAATCGCTTCTGTCGTTTTGGGAGCCTAAAAACTGCTATTTTTTGAAACCGGGTCCCAGAGTGGATAAATCTGAAAATAACACCCTGCGTTTTCATGTGTACAGCCAATCCGTATATTTTGTGAAACGATGATGTCATCACCCCACGTCTCGACCCTAGTCAGACACCGCTACGTCACATAACAGCAACAGCAACAATAATAGCGGACTACATGCTTGTGTTTGTGCCGCAGAAGCTAACGAGCCTATTAGCTTTACTAAAATAGCTTTAATTCTAAGCTTTATTTCTAAGCTTTACTAAAGTTTGTATATAGCGCGCAAGGTTTATGCGCATGCTCCAAGTCTTATTCTCCGTTTTTAGTGTATCTCTGTGGCAGAATTACAGCACCACATACTGATCTGGCATGTATACTACATCGTTTTGAGTCGGTTTCAGTGGTTTCATGTGTACGCAGATATTTGAGACGAGTAAAAAAAAAAAAAAAGATTGGATAAGGATGTGGGTGGCCACAGTGTCACCAACTGGCAAGATAAATATCACTTTTTAACATGTTTAAATTGAAATAACTTTATATTGAAATATGTCATTATGTTTGATTGTTTAAAGGTGCAATATGTAATATTTTCTGTCCGCTAGAGGCCTATTCAAAACAAAGGCGTAGCTTGATGACGCCAAGTTTGAGCGCGGAATCTTGGGACATGTGGTCTTCACATCACAGCCGGTGGAAAATAATCGGGATAGGACTCAGGAAGAAATCATGTTCATGGATGCGATTATTAGCGTTACTGTAGTATGAAGCAGAGCAGGACCGAGTGTTGTGGGAGCTGAACGAGGCCGCTGGAGCAATTGTGCAACACACGCCGTGAGCAGCGGAACTTTTATGATGTCACAGTCGCCGGCGCTGCTTCCACTTTTCCGGTCATGAGTATGAGGTAACGCAGCTCTGTTTAGCATATTAGATACATTTGAGTGTTGAAAATGTTATAACGTTACTCTGTGCGTTCGCTCGGTGGCTGCTGTGAGACACTTGTTGCACACTGCAGTAAGCTAGATCGATTTTAGAATATCATATTAAATGCTGGATGGCTTGTGTTCATAAATGGCATGCAATTAATTTTAAAGCATATTGTATGATGGAGAAAATCCTGTATTACTGTTAATAAAAACAAAGCTGCATCTGATTATGCTATGTTAGCTACTTCACAAAATAGTGTTTTTCTCTGAGGCATGGTAAAATCATGGTACTCGCAAAAAATCAAGAACATTATTTAAACAATAAGACTAAACGTGTTGCTATATAACAATAATTTGTTTTCTGTCTATAAATACAGGTGCTGGTCATATAATTAGAATATCAAAAAGTTGATTTATTTCACTAATTCCATTCAAAAAGTGAAACTTGTATATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480492 lncRNA downstream 46143 131766 ~ 131982 (-) True G418314
TU480478 lncRNA downstream 132400 45503 ~ 45725 (-) True G418300
TU480472 lncRNA downstream 151881 26033 ~ 26244 (-) True G418295
TU480453 lncRNA upstream 34023 285315 ~ 342503 (-) True G418276
TU480448 lncRNA upstream 41614 292906 ~ 306910 (-) True G418271
TU480457 lncRNA upstream 73058 324350 ~ 330891 (-) True G418280
TU480451 lncRNA upstream 96379 352828 ~ 353711 (-) True G418274
TU480469 lncRNA upstream 97796 349088 ~ 363732 (-) True G418292
CI01000304_00140443_00163606.mRNA mRNA downstream 14442 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 61297 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00348539_00351333.mRNA mRNA upstream 97203 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00670372_00671143.mRNA mRNA upstream 417984 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 431217 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 497023 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 592003 843295 ~ 844705 (-) True CI01000304_00843412_00844705
TU481692 other upstream 1978092 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1978092 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 2011210 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 2011446 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 2011800 2263092 ~ 2265185 (-) False G419354

Expression Profile