RNA id: TU480128



Basic Information


Item Value
RNA id TU480128
length 648
lncRNA type intronic
GC content 0.42
exon number 2
gene id G417984
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 223015 ~ 223919 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGCGCACGCGCACACCAGGCCTTTGTCTGTGAAATATCCACCGCGTGTCTTTGCAGCATGTGGAATTGTCAGTGGGAGTAAACAGTTCTCGCGCACACTGAACGAGCAGGTACGAAACGTGTAGAGCGAGGGGAGACTTTCCAATACCTAGTTAGTGGCCGTTCACATGTCACGTCTTTTGCGCATTCAAGTTCGTTATTTTAAAATGTAGACACGGGACGGACTCTGCCAAGATGGACTAACAGCTGATCATACCTGTACAGGGCGTTTTTTTTTTATTTCTTATCTCCATAAGTAGTAGTATAATCTAGTAGTAAAGCTAATGCAACAGAGAGAGAGAGTGAAAAATCCACATTCAAACCAAAATATCTGACTTCCTGTTGGTTGGAGCTAATGACTGTAAATTAGAAAGTTGTCCGGCTTAATGAGAACAATGTGTGTACCGAGTTTGGTGACTGTAGGTAAAAAGGGTTATCTCAAAGCATTTTGAAAGTGACACTTCCTACTGCCAGTTGGTGGCACTATAACTTTGACTCACAATAGTCACATCCATGTGATCGGACTCCTACAACGAACACACAGCTGAAGTTTCATAAAAATCAATCAATGTATATATAAGTTATAACACTTCCTTTTACCCTTTTCTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU480107 lncRNA upstream 58343 164220 ~ 164672 (+) True G417963
TU480106 lncRNA upstream 59686 162546 ~ 163329 (+) True G417962
TU480104 lncRNA upstream 61756 160094 ~ 161259 (+) True G417960
TU480086 lncRNA upstream 80529 142090 ~ 142486 (+) True G417946
TU480085 lncRNA upstream 81217 141554 ~ 141798 (+) True G417945
TU480153 lncRNA downstream 21012 244931 ~ 325523 (+) True G418002
TU480175 lncRNA downstream 53342 277261 ~ 277982 (+) True G418024
TU480174 lncRNA downstream 55974 279893 ~ 281026 (+) True G418023
TU480207 lncRNA downstream 216665 440584 ~ 440872 (+) True G418047
TU480212 lncRNA downstream 246296 470215 ~ 470473 (+) False G418050
CI01000304_00047400_00073206.mRNA mRNA upstream 149677 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00292894_00306187.mRNA mRNA downstream 68975 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00308220_00310793.mRNA mRNA downstream 83754 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00315935_00342330.mRNA mRNA downstream 90823 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 146414 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00424703_00434890.mRNA mRNA downstream 200784 424703 ~ 435066 (+) True CI01000304_00424703_00434890
TU480131 other downstream 2784 226703 ~ 227853 (+) True G417987
TU480224 other downstream 334173 558092 ~ 564451 (+) True G418059
TU480282 other downstream 648751 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1868575 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 4079417 4303336 ~ 4303832 (+) True G420445

Expression Profile