Item | Value |
---|---|
RNA id | TCONS_00019666 |
length | 1649 |
RNA type | mRNA |
GC content | 0.43 |
exon number | 2 |
gene id | XLOC_009853 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007127.7 |
NCBI id | CM002900.2 |
chromosome length | 55266484 |
location | 20910186 ~ 20913003 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0007275 | multicellular organism development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
id | description |
---|---|
ZDB-GENE-990415-97 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; chondroblast; mesenchyme; myoblast; and pectoral fin bud. Orthologous to human HOXA10 (homeobox A10). |
ensembl_id | ENSDART00000046766 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00019662 | lncRNA | upstream | 22762 | 20871044 ~ 20887424 (+) | False | XLOC_009850 |
TCONS_00019660 | lncRNA | upstream | 29981 | 20871015 ~ 20880205 (+) | False | XLOC_009850 |
TCONS_00019663 | lncRNA | upstream | 35686 | 20873723 ~ 20874500 (+) | True | XLOC_009850 |
TCONS_00021920 | lncRNA | upstream | 214669 | 20684940 ~ 20695517 (+) | False | XLOC_009848 |
TCONS_00021708 | lncRNA | upstream | 214669 | 20688916 ~ 20695517 (+) | True | XLOC_009848 |
TCONS_00021921 | lncRNA | downstream | 228045 | 21141048 ~ 21142516 (+) | True | XLOC_009859 |
TCONS_00021922 | lncRNA | downstream | 721384 | 21634387 ~ 21634836 (+) | True | XLOC_009862 |
TCONS_00019681 | lncRNA | downstream | 785992 | 21698995 ~ 21703320 (+) | False | XLOC_009863 |
TCONS_00019683 | lncRNA | downstream | 786086 | 21699089 ~ 21703817 (+) | False | XLOC_009863 |
TCONS_00019684 | lncRNA | downstream | 786092 | 21699095 ~ 21703511 (+) | False | XLOC_009863 |
TCONS_00019665 | mRNA | upstream | 2808 | 20904754 ~ 20907378 (+) | True | XLOC_009852 |
TCONS_00019664 | mRNA | upstream | 12350 | 20895904 ~ 20897836 (+) | True | XLOC_009851 |
TCONS_00019661 | mRNA | upstream | 20670 | 20871021 ~ 20889516 (+) | False | XLOC_009850 |
TCONS_00019659 | mRNA | upstream | 109688 | 20738740 ~ 20800498 (+) | True | XLOC_009849 |
TCONS_00019656 | mRNA | upstream | 394380 | 20496691 ~ 20515806 (+) | False | XLOC_009846 |
TCONS_00019668 | mRNA | downstream | 2316 | 20915319 ~ 20917584 (+) | True | XLOC_009855 |
TCONS_00019669 | mRNA | downstream | 13670 | 20926673 ~ 20929183 (+) | True | XLOC_009856 |
TCONS_00019670 | mRNA | downstream | 21350 | 20934353 ~ 20977701 (+) | False | XLOC_009857 |
TCONS_00019671 | mRNA | downstream | 34436 | 20947439 ~ 20977706 (+) | True | XLOC_009857 |
TCONS_00019672 | mRNA | downstream | 103817 | 21016820 ~ 21055136 (+) | True | XLOC_009858 |
TCONS_00019658 | other | upstream | 405321 | 20496773 ~ 20504865 (+) | True | XLOC_009846 |
TCONS_00019655 | other | upstream | 605911 | 20296823 ~ 20304275 (+) | True | XLOC_009845 |
TCONS_00019651 | other | upstream | 739358 | 20167834 ~ 20170828 (+) | True | XLOC_009843 |
TCONS_00019642 | other | upstream | 1205648 | 19704424 ~ 19704538 (+) | True | XLOC_009838 |
TCONS_00019630 | other | upstream | 1781715 | 19065345 ~ 19128471 (+) | False | XLOC_009830 |
TCONS_00019667 | other | downstream | 410 | 20913413 ~ 20913484 (+) | True | XLOC_009854 |
TCONS_00019682 | other | downstream | 786003 | 21699006 ~ 21703679 (+) | False | XLOC_009863 |
TCONS_00019718 | other | downstream | 2484798 | 23397801 ~ 23399160 (+) | False | XLOC_009882 |
TCONS_00019728 | other | downstream | 2694228 | 23607231 ~ 23607352 (+) | True | XLOC_009889 |
TCONS_00019735 | other | downstream | 2924917 | 23837920 ~ 23854611 (+) | False | XLOC_009892 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000016_08299340_08301616.mRNA | True | 996 | mRNA | 0.50 | 2 | CI01000016 | 8299340 ~ 8301616 (+) |