RNA id: TU480131


Basic Information

Item Value
RNA id TU480131
length 659
RNA type TUCP
GC content 0.49
exon number 3
gene id G417987
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 226703 ~ 227853 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTGTGTCAAGCCACTCTTGAACAACAGACAGCGTCAGAAGCATCTCGCCTGGGCTAAAGACAAAAAGGACTGGACTGCTGCTGAGTAGTCCAAAGTTATGTTCTCTGATGAAAGTAAATTTTGCATTTCCTTTGGAAATCAGGGCCCCAGAGTCTGGAGGAAGAGAGGAGAGGCACACAATCCACGTTGCTTGAGGTCCAGTGTAAAGTTTCCACAGTCAGTGATGGTTTGGGGTGCCATGTCATCTGCTGGTGTTGGTCCACTCTGTTTTCTGAGGTCCAAGGTCAACGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCGCACACAGTGCCAAAGCTACCACTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAATTAGCCAGCAAACTCGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAACGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTAATTCAGGCAAAAGGAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480128 lncRNA upstream 2784 223015 ~ 223919 (+) True G417984
TU480107 lncRNA upstream 62031 164220 ~ 164672 (+) True G417963
TU480106 lncRNA upstream 63374 162546 ~ 163329 (+) True G417962
TU480104 lncRNA upstream 65444 160094 ~ 161259 (+) True G417960
TU480086 lncRNA upstream 84217 142090 ~ 142486 (+) True G417946
TU480153 lncRNA downstream 17078 244931 ~ 325523 (+) True G418002
TU480175 lncRNA downstream 49408 277261 ~ 277982 (+) True G418024
TU480174 lncRNA downstream 52040 279893 ~ 281026 (+) True G418023
TU480207 lncRNA downstream 212731 440584 ~ 440872 (+) True G418047
TU480212 lncRNA downstream 242362 470215 ~ 470473 (+) False G418050
CI01000304_00047400_00073206.mRNA mRNA upstream 153365 46322 ~ 73338 (+) True CI01000304_00047400_00073206
CI01000304_00292894_00306187.mRNA mRNA downstream 65041 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00308220_00310793.mRNA mRNA downstream 79820 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00315935_00342330.mRNA mRNA downstream 86889 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00370333_00419672.mRNA mRNA downstream 142480 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00424703_00434890.mRNA mRNA downstream 196850 424703 ~ 435066 (+) True CI01000304_00424703_00434890
TU480224 other downstream 330239 558092 ~ 564451 (+) True G418059
TU480282 other downstream 644817 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1864641 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 4075483 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4945370 5173223 ~ 5173339 (+) True G420524

Expression Profile