Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480174 |
| length | 1077 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G418023 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 279893 ~ 281026 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480175 | lncRNA | upstream | 1911 | 277261 ~ 277982 (+) | True | G418024 |
| TU480036 | lncRNA | upstream | 11683 | 168520 ~ 268210 (+) | True | G417901 |
| TU480128 | lncRNA | upstream | 55974 | 223015 ~ 223919 (+) | True | G417984 |
| TU480107 | lncRNA | upstream | 115221 | 164220 ~ 164672 (+) | True | G417963 |
| TU480106 | lncRNA | upstream | 116564 | 162546 ~ 163329 (+) | True | G417962 |
| TU480207 | lncRNA | downstream | 159558 | 440584 ~ 440872 (+) | True | G418047 |
| TU480212 | lncRNA | downstream | 189189 | 470215 ~ 470473 (+) | False | G418050 |
| TU480214 | lncRNA | downstream | 189189 | 470215 ~ 470572 (+) | True | G418050 |
| TU480221 | lncRNA | downstream | 197653 | 478679 ~ 478899 (+) | True | G418056 |
| TU480155 | lncRNA | downstream | 240658 | 521684 ~ 526522 (+) | True | G418004 |
| CI01000304_00047400_00073206.mRNA | mRNA | upstream | 206555 | 46322 ~ 73338 (+) | True | CI01000304_00047400_00073206 |
| CI01000304_00292894_00306187.mRNA | mRNA | downstream | 11868 | 292894 ~ 306479 (+) | True | CI01000304_00292894_00306187 |
| CI01000304_00308220_00310793.mRNA | mRNA | downstream | 26647 | 307673 ~ 311267 (+) | True | CI01000304_00308220_00310793 |
| CI01000304_00315935_00342330.mRNA | mRNA | downstream | 33716 | 314742 ~ 342523 (+) | False | CI01000304_00315935_00342330 |
| CI01000304_00370333_00419672.mRNA | mRNA | downstream | 89307 | 370333 ~ 420755 (+) | True | CI01000304_00370333_00419672 |
| CI01000304_00424703_00434890.mRNA | mRNA | downstream | 143677 | 424703 ~ 435066 (+) | True | CI01000304_00424703_00434890 |
| TU480131 | other | upstream | 52040 | 226703 ~ 227853 (+) | True | G417987 |
| TU480224 | other | downstream | 277066 | 558092 ~ 564451 (+) | True | G418059 |
| TU480282 | other | downstream | 591644 | 872670 ~ 875249 (+) | True | G418116 |
| TU481280 | other | downstream | 1811468 | 2092494 ~ 2093678 (+) | True | G418981 |
| TU482914 | other | downstream | 4022310 | 4303336 ~ 4303832 (+) | True | G420445 |
| TU483012 | other | downstream | 4892197 | 5173223 ~ 5173339 (+) | True | G420524 |
