RNA id: TU480448


Basic Information

Item Value
RNA id TU480448
length 1848
lncRNA type antisense_over
GC content 0.44
exon number 5
gene id G418271
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 292906 ~ 306910 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGTTTTAATTTTTAATTTTCTGAAGCTTAAAAATAAATCTGTTCAAGAATGTTATTACCTTCTTACAAAGTATCAATTCAGCTGAACCATCATTGCACTCAGATACAGGGAGTCTTGCAAAAAGATACAGGGTAAGTAAAAGGATTCGAAAAAAGAGACATTTCAATCAATCACAGAAATTTGAGCCAATATCACAACTGATATGCTGACAAAGCCAAGCTTGAATTTTGTATCATACATCAAGCATGTACTGCATAACTGATCAGTGCACCTTTAGCAAATATTTAGAGCATTTCCAATGTCTAAAATACAAGATCCTTTGAAATTAGTACATTTATAATATGTTCTTGCTGCAATCCATTCTCCAAAAACACAGTAATGTATCAAAAGCTTGCAAAATATTCAGACAGAAAAAGATTACAATTTATTAACATCATTCTAAACCAGCCAAGACCTGTAGAAAATCTGTACAACCTTTGGCTGCTTCTGATAGTCTTTTAAAGAGCTAAAGAGTTTAACAACCTGTAGAGAACTTAAAAGTGCTATTTGTGAACTTTAGGACAAAATCAAAACATCAGACATCCACAGTTACTGACTAATTTATGACAAATCAAATGTCTTCTTTCATCCTGAGAGTTAAAGTCGAAGTCCTTCCAAGCCGTTTTGGGACTAAAACTAGAACAGAACGAGAAAGCACAACATGCATGTAAGTGTTGAGCATCAGAAAACCTCTAGGTCGTTTGTGTTGTACACTACAGGGTTGTCCTCTGTGCCCAGTGCAGACTCCGACGGGCCCTCCTCCAGGGACCCCAAAGCCTCTTCAGTGTCACTAGCGAACGTTTCTCGTGACACGTCATCATGTTCCTGTAGATTGAGCGTGCTAATGGCTTGCTTCATCTTCTTCGCAACAATTTGCTTCCGTCGCTTCTTAGCAGCCTTTTTGCTGTTGTATTCTTTCTGGTTCTCCTCATAAAAGATCTCCTTCACCTGCCCATCAGAGATACTGGGTGTGTTCTTCAGTAAGTTCAGATACACTCCACCAGGTGTCCGTCTCCTACTACCATCCACAGTGTAGAGACCTCCATTTTGTTCAATTGTTGCCGTCTCTGACAGAAGCTCGATGGCTTTTTTTTTCCCAATAACTCTCACCACACGCTCTATTAGATCCTTCTTTGGCTCCATGAGTCTGTGTGCGATTTCATCAACCACTTTCTCTTCAGGGTCATCCTCAATGATCTCATATCGACCCTTCAAGTCCATCTCAGCCCGCGGGCCCAGTCTCTCCTTGGCCGGACGCTTTCTCTTTTGACAGCTCTTATCTGTCTGGGCTTGTCCTCTCTGCATGTATCCCTCCAGCTCACCATCCAACATGCTCTTCGATCCCTCTTCCACCTCTCCACGCTCTTTTTCCATCATCTTGCGGGCCAGGACATAATTATAGGTCTCACTCTGCCGACTGCTCATGCTGACGCCCCCTTCCATTCCCAAGATGCCCAGCTCTGCTGCGACAGCTTCCTGACTTTGCTCCTGCACCACAGAGCCCCAGATGTTGTTGACCTTGCGAGCGAAGGGGCCCGCTGCAGCCCTGGCATGGACAGGAGCTGGAATACTGGAACACTTGAGCCGTTTGTGTCTCCACAGCATGGCCTCATCTTCAGAGTCAGAGTTGCTGTCACTGGAGTCTGTGTTCTTGCAGTTGCGGTATCCTGTGATGGATGCGGCGCTCAAAGAGGGTCCTCTACTCTGAAAAGATGATACCTGCACTCGCTCCGCTGCAGCATCCCGCATATCAGACTCATGATCAGACTCTAGTTCTCCATCCTCAAGATCCGCCATTCTGTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480468 lncRNA downstream 41614 178125 ~ 251292 (-) True G418291
TU480492 lncRNA downstream 160924 131766 ~ 131982 (-) True G418314
TU480478 lncRNA downstream 247181 45503 ~ 45725 (-) True G418300
TU480472 lncRNA downstream 266662 26033 ~ 26244 (-) True G418295
TU480457 lncRNA upstream 17440 324350 ~ 330891 (-) True G418280
TU480451 lncRNA upstream 40761 352828 ~ 353711 (-) True G418274
TU480469 lncRNA upstream 42178 349088 ~ 363732 (-) True G418292
TU480560 lncRNA upstream 135062 441972 ~ 442201 (-) True G418372
TU480576 lncRNA upstream 163331 470241 ~ 470460 (-) True G418387
CI01000304_00167148_00268194.mRNA mRNA downstream 24712 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 129223 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 176078 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00348539_00351333.mRNA mRNA upstream 41585 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00670372_00671143.mRNA mRNA upstream 362366 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 375599 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 441405 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 536385 843295 ~ 844705 (-) True CI01000304_00843412_00844705
TU481692 other upstream 1922474 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1922474 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1955592 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1955828 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1956182 2263092 ~ 2265185 (-) False G419354

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003905 True 1786 mRNA 0.43 5 NC_007121.7 16029260 ~ 16035413 (+)
bowfin (Amia calva) AMCG00010539 True 2748 mRNA 0.44 5 CM030129.1 34688748 ~ 34694681 (+)