RNA id: TU480207


Basic Information

Item Value
RNA id TU480207
length 289
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G418047
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 440584 ~ 440872 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACGGCGGGTTAGGACCCTGTATCGATTATCGTGGACTAAATGACATCACCGTCAAGTTCCGGTACCCCTTGCCTCTAGTTCCTCCAGCCCTCGAACAACTCAGGCAGGCCGCATACTTTACCAAGTTGGACCTTCGCTGTGCGTACAATCTAATCCGCATCAGAGAAGGGGACGAATGGAAGACAGCCTTTTCCACAACCACTGGTCACTACGAGACCCTCGTCATGCCGTTCGGGCTGGCCAACAGTCCCTCTGTCTTCCAGTCGTTCATTAACGACGTCTTCCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480153 lncRNA upstream 98053 244931 ~ 325523 (+) True G418002
TU480174 lncRNA upstream 159558 279893 ~ 281026 (+) True G418023
TU480175 lncRNA upstream 162602 277261 ~ 277982 (+) True G418024
TU480036 lncRNA upstream 172374 168520 ~ 268210 (+) True G417901
TU480128 lncRNA upstream 216665 223015 ~ 223919 (+) True G417984
TU480212 lncRNA downstream 29343 470215 ~ 470473 (+) False G418050
TU480214 lncRNA downstream 29343 470215 ~ 470572 (+) True G418050
TU480221 lncRNA downstream 37807 478679 ~ 478899 (+) True G418056
TU480155 lncRNA downstream 80812 521684 ~ 526522 (+) True G418004
TU480154 lncRNA downstream 109401 550273 ~ 551981 (+) True G418003
CI01000304_00424703_00434890.mRNA mRNA upstream 5518 424703 ~ 435066 (+) True CI01000304_00424703_00434890
CI01000304_00370333_00419672.mRNA mRNA upstream 19829 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00315935_00342330.mRNA mRNA upstream 98061 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00308220_00310793.mRNA mRNA upstream 129317 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00292894_00306187.mRNA mRNA upstream 134105 292894 ~ 306479 (+) True CI01000304_00292894_00306187
CI01000304_00453663_00453991.mRNA mRNA downstream 12791 453663 ~ 455240 (+) True CI01000304_00453663_00453991
CI01000304_00480135_00531529.mRNA mRNA downstream 38909 479781 ~ 532037 (+) True CI01000304_00480135_00531529
CI01000304_00695426_00725459.mRNA mRNA downstream 253589 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00728178_00731945.mRNA mRNA downstream 287084 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00757894_00760456.mRNA mRNA downstream 317022 757894 ~ 760660 (+) True CI01000304_00757894_00760456
TU480131 other upstream 212731 226703 ~ 227853 (+) True G417987
TU480224 other downstream 117220 558092 ~ 564451 (+) True G418059
TU480282 other downstream 431798 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1651622 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3862464 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4732351 5173223 ~ 5173339 (+) True G420524

Expression Profile