RNA id: TU480560


Basic Information

Item Value
RNA id TU480560
length 230
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G418372
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 441972 ~ 442201 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACATTCCATAGGCGTAATGGTTTTTATACTGTACAAACTGTACATTCTATCCAACTAAACTTACCCATCACAGAAAACATCCTGCATTTTTACATTGTTAATAAAACATTGTTTAGTATGTTTTTAAAGCTATTTTAAATATGAGGACTCATGAAATGTCCTCATATTTCATGTTTACGTCGTAATACCAGTGTAATACCCATGTCATTATACAAATTTTTGTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480469 lncRNA downstream 78240 349088 ~ 363732 (-) True G418292
TU480451 lncRNA downstream 88261 352828 ~ 353711 (-) True G418274
TU480453 lncRNA downstream 99469 285315 ~ 342503 (-) True G418276
TU480457 lncRNA downstream 111081 324350 ~ 330891 (-) True G418280
TU480448 lncRNA downstream 135062 292906 ~ 306910 (-) True G418271
TU480576 lncRNA upstream 28040 470241 ~ 470460 (-) True G418387
TU480580 lncRNA upstream 104273 546474 ~ 549437 (-) True G418391
TU480636 lncRNA upstream 138160 580361 ~ 580717 (-) True G418441
TU480646 lncRNA upstream 160952 603153 ~ 603576 (-) True G418450
TU480647 lncRNA upstream 164197 606398 ~ 607640 (-) True G418451
CI01000304_00348539_00351333.mRNA mRNA downstream 90639 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 173778 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 278289 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 325144 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00670372_00671143.mRNA mRNA upstream 227075 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 240308 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 306114 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 401094 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 410745 852946 ~ 861367 (-) True CI01000304_00852998_00861119
TU481692 other upstream 1787183 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1787183 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1820301 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1820537 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1820891 2263092 ~ 2265185 (-) False G419354

Expression Profile