RNA id: TU480214


Basic Information

Item Value
RNA id TU480214
length 358
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G418050
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 470215 ~ 470572 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTAAGCATCTCTGGAGAGACCTAAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGAAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480207 lncRNA upstream 29343 440584 ~ 440872 (+) True G418047
TU480153 lncRNA upstream 127684 244931 ~ 325523 (+) True G418002
TU480174 lncRNA upstream 189189 279893 ~ 281026 (+) True G418023
TU480175 lncRNA upstream 192233 277261 ~ 277982 (+) True G418024
TU480128 lncRNA upstream 246296 223015 ~ 223919 (+) True G417984
TU480221 lncRNA downstream 8107 478679 ~ 478899 (+) True G418056
TU480155 lncRNA downstream 51112 521684 ~ 526522 (+) True G418004
TU480154 lncRNA downstream 79701 550273 ~ 551981 (+) True G418003
TU480223 lncRNA downstream 87019 557591 ~ 557792 (+) True G418058
TU480242 lncRNA downstream 126714 597286 ~ 597663 (+) True G418077
CI01000304_00453663_00453991.mRNA mRNA upstream 14975 453663 ~ 455240 (+) True CI01000304_00453663_00453991
CI01000304_00424703_00434890.mRNA mRNA upstream 35149 424703 ~ 435066 (+) True CI01000304_00424703_00434890
CI01000304_00370333_00419672.mRNA mRNA upstream 49460 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00315935_00342330.mRNA mRNA upstream 127692 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00308220_00310793.mRNA mRNA upstream 158948 307673 ~ 311267 (+) True CI01000304_00308220_00310793
CI01000304_00480135_00531529.mRNA mRNA downstream 9209 479781 ~ 532037 (+) True CI01000304_00480135_00531529
CI01000304_00695426_00725459.mRNA mRNA downstream 223889 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00728178_00731945.mRNA mRNA downstream 257384 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00757894_00760456.mRNA mRNA downstream 287322 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00772995_00827316.mRNA mRNA downstream 300461 771033 ~ 827608 (+) True CI01000304_00772995_00827316
TU480131 other upstream 242362 226703 ~ 227853 (+) True G417987
TU480224 other downstream 87520 558092 ~ 564451 (+) True G418059
TU480282 other downstream 402098 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1621922 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3832764 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4702651 5173223 ~ 5173339 (+) True G420524

Expression Profile