RNA id: TU480636


Basic Information

Item Value
RNA id TU480636
length 357
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G418441
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 580361 ~ 580717 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAGATTAAAAACAAAATGTTGTGCTTTTTGTAAAATAAAGAAAACTAACATGATGCGTGATCTGTCGTCTCCCTCTGAACGAAGTCCAATCTGATTGTTCTCAGAAAATGAACTGTAACTTAGTGAATACTAATCACAAAAAAATGAGACTTATGTCTAAAGAAATGTTGAAATGTCAGGTTTTAAATCATGTAAGTCAAATCGAAAACAAAAATTCTCTGTTTATGTAATCTGTATGAAAAGAGAGCCATGTCAGACGCCCATGATTCAGCTCATTATCCGCTAGTGCGGCCACGCCCACGAAGCGAGCGCTATTCAGACGCAAATTCTGAGGCAATACATGTATACATCGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480580 lncRNA downstream 30924 546474 ~ 549437 (-) True G418391
TU480576 lncRNA downstream 109901 470241 ~ 470460 (-) True G418387
TU480560 lncRNA downstream 138160 441972 ~ 442201 (-) True G418372
TU480469 lncRNA downstream 216629 349088 ~ 363732 (-) True G418292
TU480451 lncRNA downstream 226650 352828 ~ 353711 (-) True G418274
TU480646 lncRNA upstream 22436 603153 ~ 603576 (-) True G418450
TU480647 lncRNA upstream 25681 606398 ~ 607640 (-) True G418451
TU480648 lncRNA upstream 26986 607703 ~ 607923 (-) True G418452
TU480650 lncRNA upstream 30182 610899 ~ 611174 (-) True G418454
TU480652 lncRNA upstream 32369 613086 ~ 613313 (-) True G418456
CI01000304_00348539_00351333.mRNA mRNA downstream 229028 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 312167 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 416678 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 463533 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00670372_00671143.mRNA mRNA upstream 88559 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 101792 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 167598 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 262578 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 272229 852946 ~ 861367 (-) True CI01000304_00852998_00861119
TU481692 other upstream 1648667 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1648667 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1681785 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1682021 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1682375 2263092 ~ 2265185 (-) False G419354

Expression Profile