RNA id: TU480242


Basic Information

Item Value
RNA id TU480242
length 378
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G418077
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 597286 ~ 597663 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTATAATGCTGAGTATGAAGTACACGTCACATGCGTTGCATGTTTTGATGTGTTTTTTTGGATCATGCAGGTCTCACCGGTGCAGCCAGAGGTTCCTTTCTTCACAGCGTAACCCATCTCACAATGACAGACATAAGAACCCTTGGTGTTCTCACACTCCCCAAACATACAGATGTTGCTGTTGAGTTCACACTCATTCACATCTGCAAACATCAAACAAAAGTCCCACACCAACATACTTGGTTCACCAACAGATTCAAGACAGACCCAGTACAGACAGACTTGATACATCTGGTTAGATATGCATCACATTCTTGTAACATTAACTTTTAAAACATGGGTAATTAACACAGATGTTGACTTATTTTTGCTCTTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480223 lncRNA upstream 39494 557591 ~ 557792 (+) True G418058
TU480154 lncRNA upstream 45305 550273 ~ 551981 (+) True G418003
TU480155 lncRNA upstream 70764 521684 ~ 526522 (+) True G418004
TU480221 lncRNA upstream 118387 478679 ~ 478899 (+) True G418056
TU480214 lncRNA upstream 126714 470215 ~ 470572 (+) True G418050
TU480244 lncRNA downstream 2877 600540 ~ 600753 (+) True G418079
TU480246 lncRNA downstream 3449 601112 ~ 601378 (+) True G418081
TU480248 lncRNA downstream 5430 603093 ~ 603478 (+) True G418083
TU480250 lncRNA downstream 6971 604634 ~ 604845 (+) True G418085
TU480251 lncRNA downstream 7602 605265 ~ 605572 (+) True G418086
CI01000304_00480135_00531529.mRNA mRNA upstream 65249 479781 ~ 532037 (+) True CI01000304_00480135_00531529
CI01000304_00453663_00453991.mRNA mRNA upstream 142046 453663 ~ 455240 (+) True CI01000304_00453663_00453991
CI01000304_00424703_00434890.mRNA mRNA upstream 162220 424703 ~ 435066 (+) True CI01000304_00424703_00434890
CI01000304_00370333_00419672.mRNA mRNA upstream 176531 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00315935_00342330.mRNA mRNA upstream 254763 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00695426_00725459.mRNA mRNA downstream 96798 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00728178_00731945.mRNA mRNA downstream 130293 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00757894_00760456.mRNA mRNA downstream 160231 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00772995_00827316.mRNA mRNA downstream 173370 771033 ~ 827608 (+) True CI01000304_00772995_00827316
CI01000304_00846138_00850133.mRNA mRNA downstream 248396 846059 ~ 850379 (+) True CI01000304_00846138_00850133
TU480224 other upstream 32835 558092 ~ 564451 (+) True G418059
TU480131 other upstream 369433 226703 ~ 227853 (+) True G417987
TU480282 other downstream 275007 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1494831 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3705673 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4575560 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5643570 6241233 ~ 6242997 (+) True G421162

Expression Profile