RNA id: TU480244


Basic Information

Item Value
RNA id TU480244
length 214
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G418079
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 600540 ~ 600753 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGAACTTTGCAAAGATTTTTCATGCTCAAACAGCAACATTACACACTTAAGAAAGATGAACATGGAAAAAAGCATAACAGCCCTAGTAATAAATAAAACAACAACACCAAAATCTATTTTAAATACATTTATTTCATACTAAGTATACTTCAAATCAATATGTAATTTGTCGCCGCTAGAGGTCACCTATTCAAAACAAAGGCGTAGCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480242 lncRNA upstream 2877 597286 ~ 597663 (+) True G418077
TU480223 lncRNA upstream 42748 557591 ~ 557792 (+) True G418058
TU480154 lncRNA upstream 48559 550273 ~ 551981 (+) True G418003
TU480155 lncRNA upstream 74018 521684 ~ 526522 (+) True G418004
TU480221 lncRNA upstream 121641 478679 ~ 478899 (+) True G418056
TU480246 lncRNA downstream 359 601112 ~ 601378 (+) True G418081
TU480248 lncRNA downstream 2340 603093 ~ 603478 (+) True G418083
TU480250 lncRNA downstream 3881 604634 ~ 604845 (+) True G418085
TU480251 lncRNA downstream 4512 605265 ~ 605572 (+) True G418086
TU480253 lncRNA downstream 5888 606641 ~ 606958 (+) True G418088
CI01000304_00480135_00531529.mRNA mRNA upstream 68503 479781 ~ 532037 (+) True CI01000304_00480135_00531529
CI01000304_00453663_00453991.mRNA mRNA upstream 145300 453663 ~ 455240 (+) True CI01000304_00453663_00453991
CI01000304_00424703_00434890.mRNA mRNA upstream 165474 424703 ~ 435066 (+) True CI01000304_00424703_00434890
CI01000304_00370333_00419672.mRNA mRNA upstream 179785 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00315935_00342330.mRNA mRNA upstream 258017 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00695426_00725459.mRNA mRNA downstream 93708 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00728178_00731945.mRNA mRNA downstream 127203 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00757894_00760456.mRNA mRNA downstream 157141 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00772995_00827316.mRNA mRNA downstream 170280 771033 ~ 827608 (+) True CI01000304_00772995_00827316
CI01000304_00846138_00850133.mRNA mRNA downstream 245306 846059 ~ 850379 (+) True CI01000304_00846138_00850133
TU480224 other upstream 36089 558092 ~ 564451 (+) True G418059
TU480131 other upstream 372687 226703 ~ 227853 (+) True G417987
TU480282 other downstream 271917 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1491741 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3702583 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4572470 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5640480 6241233 ~ 6242997 (+) True G421162

Expression Profile