RNA id: TU480646


Basic Information

Item Value
RNA id TU480646
length 424
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G418450
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 603153 ~ 603576 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTTGAGGTCCGTCTTTTCACACTGAGGACAACTGAGGGACTCAAACACAACTTTTAAAAAAGGTTCAAACATTCACTGATGCTTCAGAAAAAAACATGATGCATTAATAGACAGGGGGTGAAAACATTTGGAATTTGAAGATCAAGGTAAATTGTATTTAATTTGTCTTCCGGGAAACATGCAAGTATTTTCTGTTGCTTCTGAAGGGCAGTACTAAATGAAAAAAAATGATATTCAAGCGAAATAAGAAAAATTTGGACCTCTTCATCCTGTTCAAAAGTTTTCACCCCCCAACTCTTAATGCATCGTGTTTCCTTCTGAAGCATGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCACAGTTGTCCTCCATGTGAAAAGATGGATCTCAAAATCATTCAGTCACTGTTGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480636 lncRNA downstream 22436 580361 ~ 580717 (-) True G418441
TU480580 lncRNA downstream 53716 546474 ~ 549437 (-) True G418391
TU480576 lncRNA downstream 132693 470241 ~ 470460 (-) True G418387
TU480560 lncRNA downstream 160952 441972 ~ 442201 (-) True G418372
TU480469 lncRNA downstream 239421 349088 ~ 363732 (-) True G418292
TU480647 lncRNA upstream 2822 606398 ~ 607640 (-) True G418451
TU480648 lncRNA upstream 4127 607703 ~ 607923 (-) True G418452
TU480650 lncRNA upstream 7323 610899 ~ 611174 (-) True G418454
TU480652 lncRNA upstream 9510 613086 ~ 613313 (-) True G418456
TU480660 lncRNA upstream 24319 627895 ~ 628275 (-) True G418464
CI01000304_00348539_00351333.mRNA mRNA downstream 251820 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 334959 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 439470 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 486325 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00670372_00671143.mRNA mRNA upstream 65700 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 78933 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 144739 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 239719 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 249370 852946 ~ 861367 (-) True CI01000304_00852998_00861119
TU481692 other upstream 1625808 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1625808 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1658926 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1659162 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1659516 2263092 ~ 2265185 (-) False G419354

Expression Profile