RNA id: TU480648


Basic Information

Item Value
RNA id TU480648
length 221
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G418452
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 607703 ~ 607923 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAATGAATGCCTAAATGAAATCTGTTCATCATGTAAAACAATCCTGTCGCTTCAAAAGACTTCAGACAGGACCACTTTGGCAAGTTACTTGAGTTTATTGAACACAATTTATCTTTGGCGGTATGGTTCCTTATGGGGGTTCTTGCTCCAAAATTAATTGAACATACAAGAGCTTTAACATTAACACCCCGGAACAATCAGCTTGAAAATACAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480647 lncRNA downstream 63 606398 ~ 607640 (-) True G418451
TU480646 lncRNA downstream 4127 603153 ~ 603576 (-) True G418450
TU480636 lncRNA downstream 26986 580361 ~ 580717 (-) True G418441
TU480580 lncRNA downstream 58266 546474 ~ 549437 (-) True G418391
TU480576 lncRNA downstream 137243 470241 ~ 470460 (-) True G418387
TU480650 lncRNA upstream 2976 610899 ~ 611174 (-) True G418454
TU480652 lncRNA upstream 5163 613086 ~ 613313 (-) True G418456
TU480660 lncRNA upstream 19972 627895 ~ 628275 (-) True G418464
TU480663 lncRNA upstream 26269 634192 ~ 634411 (-) True G418467
TU480667 lncRNA upstream 30152 638075 ~ 638312 (-) True G418471
CI01000304_00348539_00351333.mRNA mRNA downstream 256370 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 339509 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 444020 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 490875 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00670372_00671143.mRNA mRNA upstream 61353 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 74586 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 140392 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 235372 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 245023 852946 ~ 861367 (-) True CI01000304_00852998_00861119
TU481692 other upstream 1621461 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1621461 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1654579 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1654815 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1655169 2263092 ~ 2265185 (-) False G419354

Expression Profile