RNA id: TU480663


Basic Information

Item Value
RNA id TU480663
length 220
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G418467
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 634192 ~ 634411 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATGCTAATGAAGCTGTGCAATCCCTTTTTTCTTCAAGCACATGTCGTTGACATATATCAGTTGTTTATTTAGTTGTTTTATTCTGTAAGTGAATGTTTGTGAATGTGAAAATATCCATGATATTTTGTAAATCACTTATAATTTGTATCTTTTGTTTCTTTCAGTTTTACAGTAAAGTGTGCATCACATAAGCACAATGAGGAATGTCTGTTTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480660 lncRNA downstream 5917 627895 ~ 628275 (-) True G418464
TU480652 lncRNA downstream 20879 613086 ~ 613313 (-) True G418456
TU480650 lncRNA downstream 23018 610899 ~ 611174 (-) True G418454
TU480648 lncRNA downstream 26269 607703 ~ 607923 (-) True G418452
TU480647 lncRNA downstream 26552 606398 ~ 607640 (-) True G418451
TU480667 lncRNA upstream 3664 638075 ~ 638312 (-) True G418471
TU480673 lncRNA upstream 11895 646306 ~ 646610 (-) True G418477
TU480675 lncRNA upstream 13997 648408 ~ 648684 (-) True G418479
TU480685 lncRNA upstream 29641 664052 ~ 664337 (-) True G418489
TU480688 lncRNA upstream 34161 668572 ~ 668867 (-) True G418492
CI01000304_00348539_00351333.mRNA mRNA downstream 282859 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 365998 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 470509 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 517364 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00670372_00671143.mRNA mRNA upstream 34865 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 48098 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 113904 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 208884 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 218535 852946 ~ 861367 (-) True CI01000304_00852998_00861119
TU481692 other upstream 1594973 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1594973 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1628091 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1628327 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1628681 2263092 ~ 2265185 (-) False G419354

Expression Profile