RNA id: TU480313


Basic Information

Item Value
RNA id TU480313
length 252
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G418145
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 653652 ~ 653903 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACGATGTTGTTGCCTCCATGACAGTAATAAGAATGAGATTTTTTTTTTTTTTTTTTTTACATTTTAGTGATGAGACAGTTCTTATAGTACTTGTCATGAAAATATGGTGACAATGCAAACAAATCTTATTGGTCCTAAAATCTTTTAGGCAAGAAATAATTACTTATCCATGGCAACTAATGGGACGATTATTCCATCTGATATACTGTAGGTCCCAATGAATTGGACGAGATAGGGGTTTGCAATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480308 lncRNA upstream 9091 644260 ~ 644561 (+) True G418142
TU480304 lncRNA upstream 16194 637237 ~ 637458 (+) True G418138
TU480300 lncRNA upstream 20987 632332 ~ 632665 (+) True G418134
TU480298 lncRNA upstream 25126 628321 ~ 628526 (+) True G418132
TU480259 lncRNA upstream 28054 625398 ~ 625598 (+) True G418093
TU480316 lncRNA downstream 10357 664260 ~ 664617 (+) True G418148
TU480317 lncRNA downstream 12714 666617 ~ 667483 (+) True G418149
TU480324 lncRNA downstream 39447 693350 ~ 693603 (+) True G418156
TU480349 lncRNA downstream 272602 926505 ~ 926772 (+) True G418180
TU480366 lncRNA downstream 391013 1044916 ~ 1045411 (+) True G418192
CI01000304_00480135_00531529.mRNA mRNA upstream 121615 479781 ~ 532037 (+) True CI01000304_00480135_00531529
CI01000304_00453663_00453991.mRNA mRNA upstream 198412 453663 ~ 455240 (+) True CI01000304_00453663_00453991
CI01000304_00424703_00434890.mRNA mRNA upstream 218586 424703 ~ 435066 (+) True CI01000304_00424703_00434890
CI01000304_00370333_00419672.mRNA mRNA upstream 232897 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00315935_00342330.mRNA mRNA upstream 311129 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00695426_00725459.mRNA mRNA downstream 40558 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00728178_00731945.mRNA mRNA downstream 74053 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00757894_00760456.mRNA mRNA downstream 103991 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00772995_00827316.mRNA mRNA downstream 117130 771033 ~ 827608 (+) True CI01000304_00772995_00827316
CI01000304_00846138_00850133.mRNA mRNA downstream 192156 846059 ~ 850379 (+) True CI01000304_00846138_00850133
TU480224 other upstream 89201 558092 ~ 564451 (+) True G418059
TU480131 other upstream 425799 226703 ~ 227853 (+) True G417987
TU480282 other downstream 218767 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1438591 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3649433 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4519320 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5587330 6241233 ~ 6242997 (+) True G421162

Expression Profile