RNA id: TU480685


Basic Information

Item Value
RNA id TU480685
length 286
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G418489
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 664052 ~ 664337 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCATCATCCCGCACACAAGCTTTTCAGATTGTTACCTTCAGGAAGGCGTTATAGTCTAATTAAAATAAGGACTAATAGATTTCGGAATAGCTTCTTTTCGGTAGCCATAAAGACTCTTAATACTATCTGATTTACTTGTCACTTCTCTTGTGTAATATCGTAACTAAAGGCAGTATTTTGGCTAATAATTATTGTGTTGTCGTGTGGTTGTTTGTAAGGCACTGTATATTGGTATTTGCAAGTATTATAATACAGTGCATAATGTGGGACGACTGATACCGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480675 lncRNA downstream 15368 648408 ~ 648684 (-) True G418479
TU480673 lncRNA downstream 17442 646306 ~ 646610 (-) True G418477
TU480667 lncRNA downstream 25740 638075 ~ 638312 (-) True G418471
TU480663 lncRNA downstream 29641 634192 ~ 634411 (-) True G418467
TU480660 lncRNA downstream 35777 627895 ~ 628275 (-) True G418464
TU480688 lncRNA upstream 4235 668572 ~ 668867 (-) True G418492
TU480691 lncRNA upstream 11205 675542 ~ 675887 (-) True G418494
TU480617 lncRNA upstream 31320 695657 ~ 697197 (-) True G418424
TU480615 lncRNA upstream 62672 727009 ~ 727304 (-) True G418423
TU480703 lncRNA upstream 72532 736869 ~ 737072 (-) True G418499
CI01000304_00348539_00351333.mRNA mRNA downstream 312719 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 395858 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00140443_00163606.mRNA mRNA downstream 500369 139690 ~ 163683 (-) True CI01000304_00140443_00163606
CI01000304_00088915_00116828.mRNA mRNA downstream 547224 88164 ~ 116828 (-) True CI01000304_00088915_00116828
CI01000304_00670372_00671143.mRNA mRNA upstream 4939 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00682765_00692613.mRNA mRNA upstream 18172 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00748608_00750261.mRNA mRNA upstream 83978 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00843412_00844705.mRNA mRNA upstream 178958 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 188609 852946 ~ 861367 (-) True CI01000304_00852998_00861119
TU481692 other upstream 1565047 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1565047 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1598165 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1598401 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1598755 2263092 ~ 2265185 (-) False G419354

Expression Profile