RNA id: TU480324


Basic Information

Item Value
RNA id TU480324
length 254
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G418156
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 693350 ~ 693603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAATCAAAACAAGTCTGGAATAATTATGATTTTTAAGCCCGGTTTCACAGACAGGGCTTAGACTAACTGACTAAGCCAGGATTAGGCCTTAGTTCAGTTAAGACATTTAAGTAGCTTTTATAAATGTACCCTAAAAAGAAACATTACTGGTGTGCATCTTGAGACAAAACAATGGCACTGACATATTTTAAGATATGTCAGTGCAAGTTGCTTATGGAGTAATGATGCTGAAAAATAAGCTTTGATCACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480317 lncRNA upstream 25867 666617 ~ 667483 (+) True G418149
TU480316 lncRNA upstream 28733 664260 ~ 664617 (+) True G418148
TU480313 lncRNA upstream 39447 653652 ~ 653903 (+) True G418145
TU480308 lncRNA upstream 48789 644260 ~ 644561 (+) True G418142
TU480304 lncRNA upstream 55892 637237 ~ 637458 (+) True G418138
TU480349 lncRNA downstream 232902 926505 ~ 926772 (+) True G418180
TU480366 lncRNA downstream 351313 1044916 ~ 1045411 (+) True G418192
TU480369 lncRNA downstream 353795 1047398 ~ 1047599 (+) True G418195
TU480370 lncRNA downstream 354655 1048258 ~ 1048495 (+) True G418196
TU480371 lncRNA downstream 356016 1049619 ~ 1049865 (+) True G418197
CI01000304_00480135_00531529.mRNA mRNA upstream 161313 479781 ~ 532037 (+) True CI01000304_00480135_00531529
CI01000304_00453663_00453991.mRNA mRNA upstream 238110 453663 ~ 455240 (+) True CI01000304_00453663_00453991
CI01000304_00424703_00434890.mRNA mRNA upstream 258284 424703 ~ 435066 (+) True CI01000304_00424703_00434890
CI01000304_00370333_00419672.mRNA mRNA upstream 272595 370333 ~ 420755 (+) True CI01000304_00370333_00419672
CI01000304_00315935_00342330.mRNA mRNA upstream 350827 314742 ~ 342523 (+) False CI01000304_00315935_00342330
CI01000304_00695426_00725459.mRNA mRNA downstream 858 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00728178_00731945.mRNA mRNA downstream 34353 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00757894_00760456.mRNA mRNA downstream 64291 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00772995_00827316.mRNA mRNA downstream 77430 771033 ~ 827608 (+) True CI01000304_00772995_00827316
CI01000304_00846138_00850133.mRNA mRNA downstream 152456 846059 ~ 850379 (+) True CI01000304_00846138_00850133
TU480224 other upstream 128899 558092 ~ 564451 (+) True G418059
TU480131 other upstream 465497 226703 ~ 227853 (+) True G417987
TU480282 other downstream 179067 872670 ~ 875249 (+) True G418116
TU481280 other downstream 1398891 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3609733 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4479620 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5547630 6241233 ~ 6242997 (+) True G421162

Expression Profile