RNA id: TU480773


Basic Information

Item Value
RNA id TU480773
length 502
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G418563
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 838856 ~ 839357 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGAATGTGTTTGAAGGATGGGTAAGTTGGGCTGCACACAAATATCAGCACACCAGAATCTGAACTACAGATTGATGTTGCACTGTGTTTAAACTGGATGCGACCATTATTGAGTCATGCCGCAACAGCTGTCTGCACTGGACATGACAGACCATTGCAAGTCCATTTGTCCTTCATAACAGAAGTGACGTTTTGTTGTGTTGCGTCGTGCCGCACCCAGTGTAGTATCACTATCACTGATTATAATGGGTTCTATTCTCTTTGTCCGGTCTAGACACAATGTTACGAAATAGCAGTGCCCGGCTGCATGTTCTCAGTGTTCTGCCTTTGAATCCTAGACCTCAAGCTTAACCTGACACATTCCTGTGCCATGAACAACAAGGTTCTGGATACAGCAGTTTATCTGGTATAGAGGAATCATGGTTGTAGATAGTTGGAAATTGAAATCCATGGCTTAGTGTAGATGTCAAAACCATATTGACATATTACTTAACAATTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480768 lncRNA downstream 4694 833946 ~ 834162 (-) True G418558
TU480766 lncRNA downstream 10013 828514 ~ 828843 (-) True G418556
TU480703 lncRNA downstream 101784 736869 ~ 737072 (-) True G418499
TU480615 lncRNA downstream 111552 727009 ~ 727304 (-) True G418423
TU480617 lncRNA downstream 141659 695657 ~ 697197 (-) True G418424
TU480739 lncRNA upstream 33315 872672 ~ 875306 (-) True G418530
TU480778 lncRNA upstream 46449 885806 ~ 889909 (-) True G418567
TU480785 lncRNA upstream 63485 902842 ~ 905854 (-) False G418573
TU480786 lncRNA upstream 65553 904910 ~ 905854 (-) True G418573
TU480793 lncRNA upstream 70283 909640 ~ 916578 (-) False G418576
CI01000304_00748608_00750261.mRNA mRNA downstream 87324 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00682765_00692613.mRNA mRNA downstream 146200 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00670372_00671143.mRNA mRNA downstream 167713 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00348539_00351333.mRNA mRNA downstream 487523 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 570662 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00843412_00844705.mRNA mRNA upstream 3938 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00852998_00861119.mRNA mRNA upstream 13589 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00862451_00870277.mRNA mRNA upstream 22796 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00877256_00878179.mRNA mRNA upstream 36777 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_01030191_01033191.mRNA mRNA upstream 189815 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
TU481692 other upstream 1390027 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1390027 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1423145 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1423381 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1423735 2263092 ~ 2265185 (-) False G419354

Expression Profile