RNA id: TU480282



Basic Information


Item Value
RNA id TU480282
length 2580
RNA type TUCP
GC content 0.38
exon number 1
gene id G418116
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 872670 ~ 875249 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTCTGTGGAACTTTTACACACAAATATTGGGCAACTGTAAATAAGCATCACACATTTCAGCATGTACTTTGGTGTGGATATCCACCAGAAGACGCCTAGAGCTCAACCGATTCCAGTTATCACACCCACGTATTTATAATGCACTGTTATTCACCATAACATAGGAGTATCAGTCATGCTAGGTTGGCTGCTCCCTGGTTGCATGTCTGACATATTTTTGCAGCTTAAACAGGAGTAAACACACCTTTCCTATGTCAACTATAACTGAAAAACAACAGCAGACTTGTGTGCAGGCAGGGAGCCACCAACACACGACTGGAACGCAGGCTTACGGTCACACAGTTGAGCGCCTGGACGTATGCATGATTTACAGTTACGCAAAACTGCTTGCGTTGAGAACGGGCATCATGAGATTGATGACGGCGTCTGGTCTCGGGTTTGCTCTACTGTTTCCATTGTCATTCAGCATGCATGCAGCTAGGGTCCAGAACAGCACCTTTATAAGTTCTCATATAGCACCATTTTTTCATATATATATATGTGTGTGTGTGAAGTTTGTCAGGACCCTACTGTTGGCATGCACAAACGTCAATTTTAAACTTCATAGTTCTCCATATATGAATCCTACATATTTCAACCTTACATTACAAGGCAAATCAGGAATATTCATACTGTACCATACATGTTAAACAGAAACTAATACAGTACTCACATTAAAGAAAGTGCTACTAGACAGAACCATTTCTTTCTTGTTTTTGAGTCGTATAATATTAAAAGGCTCTACAGGAGGACACACTACATTACATTATCTAAAGGTACACAAAAACATCTTTTAAAAATTTCGCCATCTTTTAAAATCATTTATCAAACACTGACACGTCTTAATTCCAACTGCAAATGGTCAACACAAAGATAAAAAAGGAACAACTCAAGAAAGCTTGTGAACAACCACTCTGTTTTCTTTTTTTAGAACATTACATTACCCACACAACTACCAAGAACAAATACAGAAGTTTATGCATCTCTGCTCTGATATTTCCAGAACTAAAATATTTTACTTTTTGACTCTGTGTTATTGTTCATTTTATTTGCGAGATCATGTTATCGCATTCGAAATACTTTTTTCCCCGTTTCTTTTGTTTTCTTAGATCATGCGTACAAAATGTTACGTTTTAGAGATGAAGGCAAACTACGTTGGAGCAACAATTTGTAACCCTAAATTCAATCATTACAACCACAGTGTAATGATTTTAAGGCCTACGGGTTGACTTCAGTACATGTTATGCATAACAGTCCAATTTCATGAATTCAAGTGTTTAGAGTAACTTGGATATAGCTGCAATACAATAGCATTTTGAGATGGCCTTATAAATTGACATAGCTGTTTCTTCTAACACTACAGAAAAATAGACAGCAGTCTTCCCAATAATTGCTTTTTAAAATGAAATCAGCCATTTTATCTGGGTGATAAAACTGTGTACACTAGCAATAATTATATACCACCTATACATAAAGCAAGAAAAACATCATACGAACACTGCTCTCTTCTGGTCATGCATTGCACATACACGTATAACAAGCATACTTCTACTCATTTTCTTTGTTGGGAACAAACCTGTACTCAGATTTTTAAAGTGCACACGGTTCATCCATTTCACGCCAGCTTTTATACTGCTTCATAGGTAAAAGAAAAATAACTTGCCGCTGCCATTCAAGGGTTACTTTATGAATATTTTGATGCCCTTGGAAGAGAAAAAGGGGGAGATAACAACTGCCTCATCATTCCTACCTTCTAAATACAGGTAATCTGAATACTAGGCATTATGACCCACACTAGTATATTCTGCCTCCTATAGCAGCCCTTATTGTAAGAAATCTGTGTGCAGACAGTCATAGGAAACGAACCAACAATGAGAACAATATAATCACAGACTGAATACTTGGTGTCAGTGATACGCTAATTAGACACATCGCAACCAAATGTGATCGAAATAAACCAAGAAGTGCAAAGAGCAAACAGATGAATGCACTTCTGAAAGGCTGAGGTGTTCATTTGGGAGCACGATTGTCACTCTTCTCACATGGGGCATAAACGAAGGTCCTCTTTGCAGTGGTGAAGCAGCTCAAAGTGCTGTTTAAATAAAGTGCTTCCTGTAGGAGGTGTCTGTTATAGATCAGCATCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCATTCCACACCCGTAAGACCTTCGTTCATCTTTGGAACACAAATTAAGATATTTTTGTTGAAATCCGAGAGCTTTCTGACTCCTCCATAGACAGCAATTTAACCACCAATTTCAAGGTCCAAAAAAGTACGAAAGACATCGTTAAAATAGTGACTGCAGTGGTTCAAACTTCATTTTATAAAACGACGAGAATACTTTTTGTGCACAAAAATGAAACAAAAATAACGACTTTGTTCAACAATATCCTCTCTTCTGTGTCATTCTCATACGCTGTTTACGTTCAGCGCTTCCAGGTTCTACATCAGAACGCCGACTCATTATTGGCTAGCTCCTGCATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU480324 lncRNA upstream 179067 693350 ~ 693603 (+) True G418156
TU480317 lncRNA upstream 205187 666617 ~ 667483 (+) True G418149
TU480316 lncRNA upstream 208053 664260 ~ 664617 (+) True G418148
TU480313 lncRNA upstream 218767 653652 ~ 653903 (+) True G418145
TU480308 lncRNA upstream 228109 644260 ~ 644561 (+) True G418142
TU480349 lncRNA downstream 51256 926505 ~ 926772 (+) True G418180
TU480366 lncRNA downstream 169667 1044916 ~ 1045411 (+) True G418192
TU480369 lncRNA downstream 172149 1047398 ~ 1047599 (+) True G418195
TU480370 lncRNA downstream 173009 1048258 ~ 1048495 (+) True G418196
TU480371 lncRNA downstream 174370 1049619 ~ 1049865 (+) True G418197
CI01000304_00846138_00850133.mRNA mRNA upstream 22291 846059 ~ 850379 (+) True CI01000304_00846138_00850133
CI01000304_00772995_00827316.mRNA mRNA upstream 45062 771033 ~ 827608 (+) True CI01000304_00772995_00827316
CI01000304_00757894_00760456.mRNA mRNA upstream 112010 757894 ~ 760660 (+) True CI01000304_00757894_00760456
CI01000304_00728178_00731945.mRNA mRNA upstream 140396 727956 ~ 732274 (+) True CI01000304_00728178_00731945
CI01000304_00695426_00725459.mRNA mRNA upstream 147211 694461 ~ 725459 (+) True CI01000304_00695426_00725459
CI01000304_00884782_00917034.mRNA mRNA downstream 9241 884490 ~ 917034 (+) True CI01000304_00884782_00917034
CI01000304_00933179_00942864.mRNA mRNA downstream 56549 931798 ~ 943865 (+) True CI01000304_00933179_00942864
CI01000304_00962923_00975418.mRNA mRNA downstream 87504 962753 ~ 975644 (+) True CI01000304_00962923_00975418
CI01000304_00983004_01018406.mRNA mRNA downstream 107663 982912 ~ 1018693 (+) True CI01000304_00983004_01018406
CI01000304_01173248_01184405.mRNA mRNA downstream 296888 1172137 ~ 1184529 (+) True CI01000304_01173248_01184405
TU480224 other upstream 308219 558092 ~ 564451 (+) True G418059
TU480131 other upstream 644817 226703 ~ 227853 (+) True G417987
TU481280 other downstream 1217245 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3428087 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4297974 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5365984 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 6477400 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile