RNA id: TU480786


Basic Information

Item Value
RNA id TU480786
length 472
lncRNA type antisense_over
GC content 0.46
exon number 4
gene id G418573
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 902842 ~ 905854 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTGGATCGCCTCTGTTCACACCTGTCCTGCAGTTATCACAACACTCACTGCTACCCAGAATTCCAGACGTCACTTTCCTCAGGCGCTTGTCTTCAAAATGACACAATATCAACTTTCGTCTGCATTTGGTTGAATTTAGATACTTTTCCATTTTTGCCATCATGTCCATTTTGTAATCTCTGAAGCGCTCACTTTTGGACTGATTGAGTATGAATCTATTCAGGGCCATATCTCCAGGCATCCATAAGACGTGACAGGCGCTGGGCAGCCCGTCTCTACCAGCCCTCCCGATCTCCTGATAGTATGACTCCATTTCTTTGGGAGCTCCGTAATGGATGACCTTCCTGATATCAGATTTATTAATGCCCATCCCAAACGCCACAGTGGCCACCACACACTGCGGATGAAACCATGAAGAAACAACACTGTTATGTACTGTAACTTTCAGAAAACCCCACCCAGAGCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480778 lncRNA downstream 15001 885806 ~ 889909 (-) True G418567
TU480739 lncRNA downstream 29604 872672 ~ 875306 (-) True G418530
TU480773 lncRNA downstream 65553 838856 ~ 839357 (-) True G418563
TU480768 lncRNA downstream 70748 833946 ~ 834162 (-) True G418558
TU480766 lncRNA downstream 76067 828514 ~ 828843 (-) True G418556
TU480793 lncRNA upstream 3786 909640 ~ 916578 (-) False G418576
TU480791 lncRNA upstream 5808 911662 ~ 916578 (-) False G418576
TU480792 lncRNA upstream 6828 912682 ~ 916578 (-) True G418576
TU480814 lncRNA upstream 20650 926504 ~ 926783 (-) True G418584
TU480831 lncRNA upstream 28281 934135 ~ 934364 (-) True G418598
CI01000304_00877256_00878179.mRNA mRNA downstream 26731 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_00862451_00870277.mRNA mRNA downstream 32481 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00852998_00861119.mRNA mRNA downstream 43543 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00843412_00844705.mRNA mRNA downstream 60205 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00748608_00750261.mRNA mRNA downstream 153378 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_01030191_01033191.mRNA mRNA upstream 123318 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_01054942_01133130.mRNA mRNA upstream 149088 1054942 ~ 1133130 (-) True CI01000304_01054942_01133130
CI01000304_01186035_01200177.mRNA mRNA upstream 280007 1185861 ~ 1200808 (-) True CI01000304_01186035_01200177
CI01000304_01216763_01232729.mRNA mRNA upstream 310862 1216716 ~ 1232729 (-) True CI01000304_01216763_01232729
CI01000304_01365055_01365447.mRNA mRNA upstream 458947 1364801 ~ 1365447 (-) False CI01000304_01365055_01365447
TU481692 other upstream 1323530 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1323530 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1356648 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1356884 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1357238 2263092 ~ 2265185 (-) False G419354

Expression Profile