RNA id: TU480792


Basic Information

Item Value
RNA id TU480792
length 410
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G418576
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 909640 ~ 916578 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGCGGCATGGGAATACTGATGAAGAGCTCATCTTCACTCGTGTCCATGACATCTGAATCGAGCTGTGACTTTTCAAACACATGTTTAACACCAGGTCTGTCTGCAGTCGCTGATTTATCCAGCGGCTCTATCCAGCTGATGTCATGATGTGCTTCTCTTTGGAGTTCATAAACCGCCAGCCTGAGCAGGAAGTTACTGATATCTTCAGGAACACGAGAGCGGATTGCTTTAAAATCACTCAGATCTGAGCTGGCTGGAGGAGAGGCGATGTTTTTTCTGATGATGTTATAGACAGATGCTGAGAGTCCAGCTCTGTCCGTGTCCACAGCACAGCCCATCTTCTGCGCCTGCAGCAGATGAGACTCCACCACTGCCATGGGCAGAGACCGAGCGTCTGCTACTTGCCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480785 lncRNA downstream 6828 902842 ~ 905854 (-) False G418573
TU480786 lncRNA downstream 6828 904910 ~ 905854 (-) True G418573
TU480778 lncRNA downstream 22773 885806 ~ 889909 (-) True G418567
TU480739 lncRNA downstream 37376 872672 ~ 875306 (-) True G418530
TU480773 lncRNA downstream 73325 838856 ~ 839357 (-) True G418563
TU480814 lncRNA upstream 9926 926504 ~ 926783 (-) True G418584
TU480831 lncRNA upstream 17557 934135 ~ 934364 (-) True G418598
TU480834 lncRNA upstream 34302 950880 ~ 951122 (-) True G418601
TU480823 lncRNA upstream 47161 963739 ~ 1020047 (-) True G418590
TU480825 lncRNA upstream 49848 966426 ~ 968577 (-) True G418592
CI01000304_00877256_00878179.mRNA mRNA downstream 34503 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_00862451_00870277.mRNA mRNA downstream 40253 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00852998_00861119.mRNA mRNA downstream 51315 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00843412_00844705.mRNA mRNA downstream 67977 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00748608_00750261.mRNA mRNA downstream 161150 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_01030191_01033191.mRNA mRNA upstream 112594 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_01054942_01133130.mRNA mRNA upstream 138364 1054942 ~ 1133130 (-) True CI01000304_01054942_01133130
CI01000304_01186035_01200177.mRNA mRNA upstream 269283 1185861 ~ 1200808 (-) True CI01000304_01186035_01200177
CI01000304_01216763_01232729.mRNA mRNA upstream 300138 1216716 ~ 1232729 (-) True CI01000304_01216763_01232729
CI01000304_01365055_01365447.mRNA mRNA upstream 448223 1364801 ~ 1365447 (-) False CI01000304_01365055_01365447
TU481692 other upstream 1312806 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1312806 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1345924 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1346160 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1346514 2263092 ~ 2265185 (-) False G419354

Expression Profile