RNA id: TU480849


Basic Information

Item Value
RNA id TU480849
length 1318
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G418616
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 982262 ~ 983636 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATGTATATTGGTTTGCAGTGCCATTCTGGACAGGTTTGAAGGTGCTCTTGGGGCTGGGTGGAGACACAGAGTTTGTGTGAACAGTTACTGCTGCAGTGGGTGTGAAAATGGCCACCTTAGATGAGGGGACCTCAAAGGGTCCGGCTGTGGACTCTCCCTCCACAAAGACCTTGGGCTGTCCTGGGAAAGACGGAGTCGACGGGGTGACCGTGGAAGGTGAGACTGATACTGGATTCTGAGTAAAGTCCGAATTTATTATAGGATCCTGTCCTATGCACTTGAGGCCGGCAGTGCAGAGAGCCAGACTCAGCAAGCAGGCCAGGATGGGCAGGATGCAGATTTTTTCAGAGCGGACGCAGTTACTCACCCGCTCCAGATCGAGGCACACACAGCACACGGCCGCAGGCAAAGGCACGCATCCCAGAGGACCACGCTCGGAGCTGTCGCCGTCCCCCGGAACGTCCTCCTCCGCTTCGCCGGGCGTCTCTTTTGTGGTGACCTCAGATAAAGCTTCTGAAGGAGCCTCTTGAGATGCAAGTCCAGCTGAGATGTCCTCCGCCGCTTCCGACTTCATCTCTCCCCCTCGTTCTGTCTCTCAGAAGCAGACGTGCAGCAGACCTCCCTCTAGTGCTGCGGCAGCAGCGGCAGGCATGCTGCCTCATAAAGTGTTCTTTCCATTATCAGATCACCAGCGAGGGGGAAGGGACTCGGACACGATGCTCAATTGACTAACCTCGTTACTAAAGAGGAAGAGGAAGACTTCAGTGGCTCTAATTTCTGTCGCCCCGGTCGTTCTCACTGTCTCCAAAGGAGCAGGAAGAAAAACACAGGCAGCAAGTCTATAAATAAGGCATATGCTCCGGAGGCAGATGTGTGAGGCCGCCCCAGGGTGGATCCCGCCTCAGAGCGTGTCAGAGAGGTCCGGAGAGAGTGCAGCACTCACCTGGGGGCAGGGCTGGAGGAGGGGGCTGGTGTGCCTGGGCTGCGGTTCATGCTGTCACACTCTGCCAGTCGCTACCGAAAACGGCTGAATCATCTGAAAGCAGCAGGTGTATGTCCGATCAAAGCGCTGCCTCCCCGGAGCAGAGTAAGAGTCGGTCGTTAAAGACTTGTGCGCAGAACCACACGGAAGGACAAGGAGATAGGAGTGAAGATTACACACACCCCTTCTTACACCCCTCCTCTTTCTCCCTCTCCTTATCCATCACACACGTTCTGTCTCTCGCTCTGTCTGGTGTCTCTCTCCTCTCACACTATGAGCATAAAGCAGAGAGTCGGGCAAGTCTACGCTTGATCCAATTAGAAAGAACGGCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480825 lncRNA downstream 13685 966426 ~ 968577 (-) True G418592
TU480834 lncRNA downstream 31140 950880 ~ 951122 (-) True G418601
TU480831 lncRNA downstream 47898 934135 ~ 934364 (-) True G418598
TU480814 lncRNA downstream 55479 926504 ~ 926783 (-) True G418584
TU480791 lncRNA downstream 65684 911662 ~ 916578 (-) False G418576
TU480861 lncRNA upstream 17644 1001280 ~ 1001682 (-) True G418628
TU480862 lncRNA upstream 37021 1020657 ~ 1020941 (-) True G418629
TU480826 lncRNA upstream 188562 1172198 ~ 1172813 (-) True G418593
TU480828 lncRNA upstream 189545 1173181 ~ 1175223 (-) True G418595
TU480880 lncRNA upstream 192131 1175767 ~ 1176008 (-) True G418647
CI01000304_00877256_00878179.mRNA mRNA downstream 104083 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_00862451_00870277.mRNA mRNA downstream 109833 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00852998_00861119.mRNA mRNA downstream 120895 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00843412_00844705.mRNA mRNA downstream 137557 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00748608_00750261.mRNA mRNA downstream 230730 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_01030191_01033191.mRNA mRNA upstream 45536 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_01054942_01133130.mRNA mRNA upstream 71306 1054942 ~ 1133130 (-) True CI01000304_01054942_01133130
CI01000304_01186035_01200177.mRNA mRNA upstream 202225 1185861 ~ 1200808 (-) True CI01000304_01186035_01200177
CI01000304_01216763_01232729.mRNA mRNA upstream 233080 1216716 ~ 1232729 (-) True CI01000304_01216763_01232729
CI01000304_01365055_01365447.mRNA mRNA upstream 381165 1364801 ~ 1365447 (-) False CI01000304_01365055_01365447
TU481692 other upstream 1245748 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1245748 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1278866 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1279102 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1279456 2263092 ~ 2265185 (-) False G419354

Expression Profile