RNA id: TU480861


Basic Information

Item Value
RNA id TU480861
length 328
lncRNA type intronic
GC content 0.39
exon number 2
gene id G418628
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1001280 ~ 1001682 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAAAAATCCATCTGATGTTCCCGATGTTCTGAGAGGTGAACAGACTGCTGAATCATACTGCAGATCTAATGGTGACTCAGTGAATGCTTTGTGCTCAAGGCTCAGGCTATCTGACATCTTTAAGAACTCCTCTTTCAAACAATGCTTTAAAATGTATGTGATAAAAGCATCTACAATGTACAGTACTACTGTTTGCTTATAGTCTAGAATCAGGCCAGTTGAAGATGAAGACTAGATCATGTGCCACACAGCATGTTAGCACAGGACATTAACTCAATATTCAAACACAAATGAAACACAGAGAGGCTACTGAAGGGATAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480849 lncRNA downstream 17644 982262 ~ 983636 (-) True G418616
TU480825 lncRNA downstream 32703 966426 ~ 968577 (-) True G418592
TU480834 lncRNA downstream 50158 950880 ~ 951122 (-) True G418601
TU480831 lncRNA downstream 66916 934135 ~ 934364 (-) True G418598
TU480814 lncRNA downstream 74497 926504 ~ 926783 (-) True G418584
TU480862 lncRNA upstream 18975 1020657 ~ 1020941 (-) True G418629
TU480826 lncRNA upstream 170516 1172198 ~ 1172813 (-) True G418593
TU480828 lncRNA upstream 171499 1173181 ~ 1175223 (-) True G418595
TU480880 lncRNA upstream 174085 1175767 ~ 1176008 (-) True G418647
TU480827 lncRNA upstream 176099 1177781 ~ 1178694 (-) True G418594
CI01000304_00877256_00878179.mRNA mRNA downstream 123101 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_00862451_00870277.mRNA mRNA downstream 128851 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00852998_00861119.mRNA mRNA downstream 139913 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00843412_00844705.mRNA mRNA downstream 156575 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_00748608_00750261.mRNA mRNA downstream 249748 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_01030191_01033191.mRNA mRNA upstream 27490 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_01054942_01133130.mRNA mRNA upstream 53260 1054942 ~ 1133130 (-) True CI01000304_01054942_01133130
CI01000304_01186035_01200177.mRNA mRNA upstream 184179 1185861 ~ 1200808 (-) True CI01000304_01186035_01200177
CI01000304_01216763_01232729.mRNA mRNA upstream 215034 1216716 ~ 1232729 (-) True CI01000304_01216763_01232729
CI01000304_01365055_01365447.mRNA mRNA upstream 363119 1364801 ~ 1365447 (-) False CI01000304_01365055_01365447
TU481692 other upstream 1227702 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1227702 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1260820 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1261056 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1261410 2263092 ~ 2265185 (-) False G419354

Expression Profile