RNA id: TU480425


Basic Information

Item Value
RNA id TU480425
length 398
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G418248
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1153175 ~ 1153572 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCTGACAAAGACAATCTGAGAAATATTAATAAATATCCTGATACATCCGAGCTTTATAATGGCAGTATGCGTTACCAAATGAGTATGAGCTGAAGAAAGTGTCTCCATCCACATCTATCCATCATAAACATATTCCACATGGCTCCAGAGGGGTAATAAAGGCCTTCTGAAGCGAAGCGATGTGTTTGTGTAAAAAAAATATATATATTTAACAAGTTATGAAGTAAAATATGTAGCTTCCGCCAGACCGCCTTCTGTATTCAAATTACGAAAAAAATGGAACTGGCGTTGCGTCAGTTGAATAGGGAAGGCGGGATATTTATTAATATTTCTCAGATTTTCTTTGTCAGAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480274 lncRNA upstream 76450 1064027 ~ 1076725 (+) True G418108
TU480372 lncRNA upstream 101827 1051066 ~ 1051348 (+) True G418198
TU480371 lncRNA upstream 103310 1049619 ~ 1049865 (+) True G418197
TU480370 lncRNA upstream 104680 1048258 ~ 1048495 (+) True G418196
TU480369 lncRNA upstream 105576 1047398 ~ 1047599 (+) True G418195
TU480430 lncRNA downstream 8450 1162022 ~ 1163131 (+) True G418253
TU480433 lncRNA downstream 12372 1165944 ~ 1166193 (+) True G418256
TU480434 lncRNA downstream 12723 1166295 ~ 1166598 (+) True G418257
TU480438 lncRNA downstream 26242 1179814 ~ 1180017 (+) True G418261
TU480279 lncRNA downstream 52019 1205591 ~ 1206410 (+) True G418113
CI01000304_00983004_01018406.mRNA mRNA upstream 134482 982912 ~ 1018693 (+) True CI01000304_00983004_01018406
CI01000304_00962923_00975418.mRNA mRNA upstream 177531 962753 ~ 975644 (+) True CI01000304_00962923_00975418
CI01000304_00933179_00942864.mRNA mRNA upstream 209310 931798 ~ 943865 (+) True CI01000304_00933179_00942864
CI01000304_00884782_00917034.mRNA mRNA upstream 236141 884490 ~ 917034 (+) True CI01000304_00884782_00917034
CI01000304_00846138_00850133.mRNA mRNA upstream 302796 846059 ~ 850379 (+) True CI01000304_00846138_00850133
CI01000304_01173248_01184405.mRNA mRNA downstream 18565 1172137 ~ 1184529 (+) True CI01000304_01173248_01184405
CI01000304_01269500_01313976.mRNA mRNA downstream 114451 1268023 ~ 1314632 (+) True CI01000304_01269500_01313976
CI01000304_01323957_01324596.mRNA mRNA downstream 170385 1323957 ~ 1326322 (+) True CI01000304_01323957_01324596
CI01000304_01337171_01361506.mRNA mRNA downstream 183599 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01366207_01367994.mRNA mRNA downstream 212548 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
TU480282 other upstream 277926 872670 ~ 875249 (+) True G418116
TU480224 other upstream 588724 558092 ~ 564451 (+) True G418059
TU480131 other upstream 925322 226703 ~ 227853 (+) True G417987
TU481280 other downstream 938922 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3149764 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4019651 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5087661 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 6199077 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile