RNA id: TCONS_00019673


Basic Information

Item Value
RNA id TCONS_00019673
length 4352
RNA type mRNA
GC content 0.45
exon number 23
gene id XLOC_009860
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21242491 ~ 21418775 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAACCGCCCGCAGCAGAACCCACGCGCACATCAGCATCTTTTATTTGCACAGTGAGTGCGAGGACTGTACATGCTATGGACTCGTTTTTGATTCAGCCCTGAATGCTACGTTTAACCGTTTTATttctacatataaaataaaagttattttgttcCAGTATTTCACTGGACCCGTATGTTTTGCGTGAAGGTTTGTTACGTTAGTACCTAACGTAAACTTTAGGCTAACGATACAAGAGAAGACAGTCTACTcaaatcttttttgtttgtttgtttgatactTGTGTTGTCGACAAGATGCCGCGCGGATACATTTCGTAGTTCTTTTGGCAGTTTTCTACTCCTCCGGAAGTGGCGGTCATTTTAACAATATCTCCAGTTTAAAAGGCTCCAACTCTGTGTCCAGGCTTTGGATAAACATGGAGATCCACAACTTCTGAGCAACTGGTTCCCCCACTCCCTTTTTTCCTCTCCTCCGTTTCCTCCTCTTTACCGTCTGACTAAAAGCACAAGATGAGCTCCGAGGAGAAAAGTTCCACCATGTCCCAGAAAATCTCCTCTCCATCTCACAGCAATAGCAGTTCTTCCTCCAAACATGACAGCAGACAGGACAGCTGGGAGATTGTTGAAGGTTTGCGTGGTGGTCATTCCAATGTTCAGGAGCCAGAGAAGCAGGCCGGCTTTATGCTTAAGAAAAGAAAATGGCCCATGAAAGGCTGGCACAAGAGATATTTCTACCTGGACAAGGGCATTTTGAAGTATGCCAAATGCGCAGCTGATGTTGAGAAAGGAAAGCTCCACGGCTGCATTGACGTTGGGCTGTCCGTCATGGCCATTAAGAAGAAAGCCAAGTGCATTGATCTGGACACTGAAGAAAACATTTATCACTTGAAGATTAAATCCCAGGAGCTCTTTGATGAATGGGTCTCTAAGCTTCGTCACCACAGACTTTACAGGCAGAATGAGATCGCCATGTTCCCTCATGAGAAAGCGCTCTTCCACCCTCATTACCCCCTCACCTCCTCTCCCACGATACCTGACAGTCAGGCCATCAGAAAGCGTGCCTCTCTTGCAAAGCAGTCTTCTCTCCACTCACCTGCACCATTTACCAGCCAGGCCAAGGTGACCGCCTGGCTCCAGTCTTCAGACGACATGGACAGGTGCAccaaagaACTGTCTGTATGCGAGGCTCAGTTGCTGGAACTGAATCACTTGTTAAGAAGTATGGAGGTGTTACACCGCACATACTCTGCCCCAGCAATCAACGCTCTGCAGGCTTCAACATATGACAGCCCAAAAAAAGAGAAGAGACATCCCAGAAAATGGCGCCCTAAGAATTATGGGAAAGACAACAAAACAACCCTGCAGGTACCAAGCTGTATCTCGGCAGGCTCTGTACGTCTCCATGCATCCAATCCCAACCTCTCTTCAGTAGACCTGACCACTGAGAAGACCTATCATGAACCTCTGGACTCTCCTATAGACGTATCCAAACTGCAGGAAGACTTCTGCCGAGTCGCAAACAACCTTCATACAACCATGAAATCAGCGCTGTGTATGCTGACTACAGAGAAGGAGAGAGTTAAACAGATGCTGGAGCACGAGCCTTGTCCATCACCATCAGCTCAGCTCCTGGGACTAAAGAACGCTCTGACTGCAGCTGTAACGCAGAACGCTGAGCTGAGAGAGCGACTGTGCAAGATTCATGCAGAGTCGCACATCTCTGAGCCCACTGTGCATATAAACCTCAGCCCTGGCCCCCTGCAGAAGCAAGACTCCAGTGATTGTTCCCGCCCCCTTGTTCACCAGGCATCCAATGAGAGCAGAGCTTCCATTTCAGAGTCACTGTCAGAGTTCTTTGATGCACAGGAAGTGCTGCTGTCAGCGAGTTCTTCAGAAAATGAGGCTTCAGAAGATGACTCATATATCAGTGACATCAGTGACAACGTGTCCATGGATAACTTCAGCAACGAGGCAGAGAATGAGAGACTCAATACAGgttgtttaGTGAATGGTGGTTTTCAAGAGCAACGGCGGTCCTGTCTTCCCTCCCCAAGTCCCAATACCAGCAACATAAGTCTGTGGAACATTCTAAAGAACAACATTGGGAAAGACTTGTCTAAAGTAGCCATGCCTGTTGAGCTAAACGAGCCACTCAACACACTGCAAAGACTGTGTGAGGAACTGGAGTACAGTGAATTGCTGGACAAGGCTGCACACACACAGGACCCATTTGAACGCATGGTTTATATTGCTACATTCGCCGTGTCTGGCTATGCTTCCAGTTATTACAGAGCAGGAGGAAAACCGTTTAATCCAGTGTTGGGTGAAACCTATGAGTGTGATCGTCCTGACAAAGGCTTTCGTTTTGTCGCTGAGCAGGTCAGCCATCACCCCCCCATATCATCATGTCATGCCGAATCTAAAAACTTCATCTTTTGGCAAGACGTGAGGTGGAGGAATAAGTTCTGGGGAAAGTCCATGGAGATTGTACCTGTAGGATCCTCTCATGTGGTTCTCCCTGGCTTTGGAGATCACTATGAGTGGAATAAGGTGACTTCGTGTATCCACAACATTCTGAGTGGGCAACGCTGGATTGAGCACTATGGTGAAATTTCCATCAAAAACTCCAACAGCGAGAAATGCCAGTGCAAAGTTACCTTCATCAAGGCAAAATACTGGAACTCCAGTATGAATGAGGTGGAGGGATCGGTCACAGACCACAAAGGCAAAGTCGTGCACAAGCTGTTCGGGAAATGGCATGAGGGCATGTACTGCGGCAGTCCACCCTCTGCTACCTGCATCTGGAGGACAAATCCCATGCCTCCTGAATTTGAGCAGTACTACGGTTTTACAAAGTTTGCTATGGAGCTCAATGAGCTCGACCCTCTTACCAAACCACTTCTTCCACCCACAGACACCAGACTACGACCTGATCAGAGGTTACTAGAAGAAGGCAATGTTCAATCTGCAGAGGTGCAGAAGCAGAGGATTGAACAGCTCCAGCGAGAACGACGCAAAGTCTTGGAGGAAAACCACATGACACATCAACCTCGATTCTTCCAGAAGTCCAAAGATGAAACCTGGGTGAGCAACAACACCTACTGGGACTTACGGAAAGATCCAGGATTCTCTAACCTTGACTGTCCAGTCCTGTGGTAATGCAGAGCAAGCCAACGTGCATCAGTTCTGCCTGCTTTTATCTTTTCTGGTCAACATTACAGCTTCAAGAGACAGAACGCCCTTTATAGTGAGGTACAAGAGACTGATGGCCACAGACATACAGTCTGATCATTTCTTATTACTCTTTATTTATTGTCCCAGCAGTTCAGTTGCCTTAACATGCTTACGTTATGTTGTAGTTTCATTTATGCAAATGGATCCCTCGTATGTATGAGAAATATGCAATCTTGGCTGAGTAAAACGATTTAGATTTTGTTGATGTGCACAATACCGTAGCACAagcaaccaacaacaacaacaaaaaactgttGGATTGTGGTCCCTTGTGGCTAAATGTAGAACTGCAGATGGCTGCAgcccaaaacattttattttgtaaggaACTATATATATTATGTTGAACAAAACTGTTCCGTCTACCTCTTAAAATTAATCTGTTGGGGAATTTAGGATGTATATTAGACTATGAATATAATACACACAGTACAATGCCTTATAATACGATTATATAGATAcactttactagaacttttaaTCGATATATTGTCACAGAGTATTGTAATTTACGAATGCCTTTTATTCTGAGACTCTTGAATGAACACAATGGTTAAGATCCTCAGACATATttatattcatctttatttattcacAAGACTGACAGATGGCTCAACAGCACTCCATattaccatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcatatgagCCTGGCAGTATTTTAAAGCTTCTTCCACACAGTTTGACCAGTAACCTGTGCTCATTTCACTACGCACTATGACACATGTTGGGGGACCGGGGCACTTGGGTGTTGATCACTTCAGCGTTTCCTCTGTCCTTCAATAAAGTCTCATTTAAAAGATTGctctttgttcatttttttttatttgggaagTTCTGGACAGATCATCATTAGGTTGAGTGATGAATGTGGGGCACTTTACAGTGGAACCATAAATGCACTGTCATTATTTACCTGCATGGCATATAGAGGTATTTTTTGAGTGGGCGCTTATATAGTGGTTAAGGGAAAAACCAAGACAACCCACAGAATATTTCCTGCTGTCATATGCAGTTTCTTCTTATTTGTTCTTCATTTcttgtaagtattttacat

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0097038 perinuclear endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090109-1 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBPL3 (oxysterol binding protein like 3).

Ensembl:

ensembl_id ENSDART00000145886

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021921 lncRNA upstream 99975 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00019662 lncRNA upstream 355067 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019660 lncRNA upstream 362286 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019663 lncRNA upstream 367991 20873723 ~ 20874500 (+) True XLOC_009850
TCONS_00021920 lncRNA upstream 546974 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021922 lncRNA downstream 215732 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00019681 lncRNA downstream 280340 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00019683 lncRNA downstream 280434 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA downstream 280440 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019690 lncRNA downstream 383064 21801719 ~ 21802475 (+) True XLOC_009864
TCONS_00019672 mRNA upstream 187355 21016820 ~ 21055136 (+) True XLOC_009858
TCONS_00019671 mRNA upstream 264785 20947439 ~ 20977706 (+) True XLOC_009857
TCONS_00019670 mRNA upstream 264790 20934353 ~ 20977701 (+) False XLOC_009857
TCONS_00019669 mRNA upstream 313308 20926673 ~ 20929183 (+) True XLOC_009856
TCONS_00019668 mRNA upstream 324907 20915319 ~ 20917584 (+) True XLOC_009855
TCONS_00019676 mRNA downstream 6459 21425114 ~ 21441226 (+) False XLOC_009861
TCONS_00019677 mRNA downstream 6484 21425139 ~ 21429214 (+) False XLOC_009861
TCONS_00019678 mRNA downstream 7869 21426524 ~ 21440926 (+) True XLOC_009861
TCONS_00019679 mRNA downstream 280325 21698980 ~ 21706709 (+) False XLOC_009863
TCONS_00019680 mRNA downstream 280329 21698984 ~ 21719111 (+) False XLOC_009863
TCONS_00019667 other upstream 329007 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 737626 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 938216 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 1071663 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 1537953 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019682 other downstream 280351 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 1979146 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 2188576 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 2419265 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 2542216 23960871 ~ 23962929 (+) False XLOC_009898

Expression Profile

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