RNA id: TU480434


Basic Information

Item Value
RNA id TU480434
length 304
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G418257
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1166295 ~ 1166598 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAATAAGATGATTTTAAATTTCATGGCATCAACACATCTCAAAAAAGTTGGGACAAGGCCATGTTTACCACTGTGTGGCATCCCCTCTTCTTTTTATAACAGTCTGCAAACGTCTGGGGACTGAGGAGACAAGTTGCTCAAGTTTAGAAATAGGAATGTTGTCCCATTCTTGTCTAATACAGGCTTCTAGTTGCTCAACTGTATTAGGTATTTTTTGTCGCATCTTCCTCTTTATGATGCGGCAAATGTTTTCTATGGGTGAAAGATGTGGACTGCAGACTGGCCATTTCAGTACCCGGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480433 lncRNA upstream 102 1165944 ~ 1166193 (+) True G418256
TU480430 lncRNA upstream 3164 1162022 ~ 1163131 (+) True G418253
TU480425 lncRNA upstream 12723 1153175 ~ 1153572 (+) True G418248
TU480274 lncRNA upstream 89570 1064027 ~ 1076725 (+) True G418108
TU480372 lncRNA upstream 114947 1051066 ~ 1051348 (+) True G418198
TU480438 lncRNA downstream 13216 1179814 ~ 1180017 (+) True G418261
TU480279 lncRNA downstream 38993 1205591 ~ 1206410 (+) True G418113
TU480882 lncRNA downstream 40112 1206710 ~ 1206976 (+) True G418649
TU480955 lncRNA downstream 165736 1332334 ~ 1332597 (+) True G418691
TU480917 lncRNA downstream 198416 1365014 ~ 1365559 (+) True G418667
CI01000304_00983004_01018406.mRNA mRNA upstream 147602 982912 ~ 1018693 (+) True CI01000304_00983004_01018406
CI01000304_00962923_00975418.mRNA mRNA upstream 190651 962753 ~ 975644 (+) True CI01000304_00962923_00975418
CI01000304_00933179_00942864.mRNA mRNA upstream 222430 931798 ~ 943865 (+) True CI01000304_00933179_00942864
CI01000304_00884782_00917034.mRNA mRNA upstream 249261 884490 ~ 917034 (+) True CI01000304_00884782_00917034
CI01000304_00846138_00850133.mRNA mRNA upstream 315916 846059 ~ 850379 (+) True CI01000304_00846138_00850133
CI01000304_01173248_01184405.mRNA mRNA downstream 5539 1172137 ~ 1184529 (+) True CI01000304_01173248_01184405
CI01000304_01269500_01313976.mRNA mRNA downstream 101425 1268023 ~ 1314632 (+) True CI01000304_01269500_01313976
CI01000304_01323957_01324596.mRNA mRNA downstream 157359 1323957 ~ 1326322 (+) True CI01000304_01323957_01324596
CI01000304_01337171_01361506.mRNA mRNA downstream 170573 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01366207_01367994.mRNA mRNA downstream 199522 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
TU480282 other upstream 291046 872670 ~ 875249 (+) True G418116
TU480224 other upstream 601844 558092 ~ 564451 (+) True G418059
TU480131 other upstream 938442 226703 ~ 227853 (+) True G417987
TU481280 other downstream 925896 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3136738 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 4006625 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5074635 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 6186051 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile