RNA id: TU480828


Basic Information

Item Value
RNA id TU480828
length 988
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G418595
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1173181 ~ 1175223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATCACACTGCATCAGATACATCTGCCCAAATTTTCTTTACTGTAATAATGGACATTTTACATACATTATTATCAACAAGGTTATTATTGTTAAAAATATGAAAAAACATTTTTGCTAACTAAAATAAAGCTGAAAGAAAATAAAATATAAATATTAGATGAAAAACTTAAACTAAACAAAATGTTTAAGTTGAAGCACTAAAATTACTAATTGGAAATAGATAAAAATTTAACTAAATTGAAACAAAACTGAAATAAAAATAAATTAAACCCTAAATAGTTAAAAAAAAAACTAATAAAAGTGACAAAAGCATATAACAAATGTAAAAATAAAAGCTACATTCAAAATATAAATTAACTACTAAAACTAACACTGATTGTCAAAAATGATTCTCATTAGACTCTCATGATACAGTATTTTCCAGTATTGCATTTACCATAATTTTTTATTTAAATCTGCGTAAATTAAAAGCAGTGCAGTAAATAATAGCATTATGTATAGCGACTTTATAATTGTAATCATGTATAGTTGTATGTTTGCGCTATATGAATGAACAGTGTGCGTGTGATGGCTGTAGTTTCACCTGAGCTGCTCAGCCTCTCTCTGCGCCTGCAGCGCTGCTCTCTCGTTCATGATCTCGTCACAGATTTTATCGTACGGTTTGTCGTCATGATGTTCTCCCATCACCCAAACCCACACATCATCATCCAGACCCTTCATCCATGACACACACTTTCCTGAAACTTTTTTTGACTTTCACACTTGCAGCTTCCTCCTTCTCCAGCTGTGTCTCTCTTTCTCTCCATTTCCTGATCTGTTCTTCTCTCATCTTAAAGAACAGCACCTGTTTCTGTTCCTCATTCAGCTCGGCCAGCAGCTCCGGCTCAATGTACATGTCAGCCAGTATCTGCTGCAGCATCTTCACGTCTCAGTAACACACAGCTCCGAGAACTTCAGCAAGGGAATGTCCGTCTCTTGGTCTCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480826 lncRNA downstream 368 1172198 ~ 1172813 (-) True G418593
TU480862 lncRNA downstream 152240 1020657 ~ 1020941 (-) True G418629
TU480823 lncRNA downstream 153134 963739 ~ 1020047 (-) True G418590
TU480880 lncRNA upstream 544 1175767 ~ 1176008 (-) True G418647
TU480827 lncRNA upstream 2558 1177781 ~ 1178694 (-) True G418594
TU480822 lncRNA upstream 7652 1182875 ~ 1184560 (-) True G418589
TU480885 lncRNA upstream 36407 1211630 ~ 1211873 (-) True G418652
TU481531 lncRNA upstream 81457 1256680 ~ 1256965 (-) True G419213
CI01000304_01054942_01133130.mRNA mRNA downstream 40051 1054942 ~ 1133130 (-) True CI01000304_01054942_01133130
CI01000304_01030191_01033191.mRNA mRNA downstream 139990 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_00877256_00878179.mRNA mRNA downstream 295002 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_00862451_00870277.mRNA mRNA downstream 300752 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00852998_00861119.mRNA mRNA downstream 311814 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_01186035_01200177.mRNA mRNA upstream 10638 1185861 ~ 1200808 (-) True CI01000304_01186035_01200177
CI01000304_01216763_01232729.mRNA mRNA upstream 41493 1216716 ~ 1232729 (-) True CI01000304_01216763_01232729
CI01000304_01365055_01365447.mRNA mRNA upstream 189578 1364801 ~ 1365447 (-) False CI01000304_01365055_01365447
CI01000304_01403041_01410830.mRNA mRNA upstream 227669 1402892 ~ 1410830 (-) True CI01000304_01403041_01410830
CI01000304_01416856_01418996.mRNA mRNA upstream 241426 1416649 ~ 1419347 (-) True CI01000304_01416856_01418996
TU481692 other upstream 1054161 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1054161 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1087279 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1087515 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1087869 2263092 ~ 2265185 (-) False G419354

Expression Profile