RNA id: TU480882


Basic Information

Item Value
RNA id TU480882
length 267
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G418649
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1206710 ~ 1206976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTATTTTTGATTTTAATGTTTGTATCTCCCTGGTCATGTTGCCTGTTTGGGGGTATAAATTAAGTGAAAACAGAATGCTTGTTTAGCAATGCATGTTACAACATTTTAGCCACATTTCTAAAACCATTTATTCTCTCAACTTAAACTAAACATTCTTTGTAAAATTCTGTTAAACAGTAAGTATAATGCCTATTTATGAATATATTGTATAATGCTGTATAATATTTAATACGCAAATTTCTAGCGTCTATAAATTATCAATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480279 lncRNA upstream 300 1205591 ~ 1206410 (+) True G418113
TU480438 lncRNA upstream 26693 1179814 ~ 1180017 (+) True G418261
TU480434 lncRNA upstream 40112 1166295 ~ 1166598 (+) True G418257
TU480433 lncRNA upstream 40517 1165944 ~ 1166193 (+) True G418256
TU480430 lncRNA upstream 43579 1162022 ~ 1163131 (+) True G418253
TU480955 lncRNA downstream 125358 1332334 ~ 1332597 (+) True G418691
TU480917 lncRNA downstream 158038 1365014 ~ 1365559 (+) True G418667
TU480958 lncRNA downstream 168985 1375961 ~ 1376294 (+) True G418694
TU480965 lncRNA downstream 175371 1382347 ~ 1382859 (+) True G418701
TU480966 lncRNA downstream 176038 1383014 ~ 1383342 (+) True G418702
CI01000304_01173248_01184405.mRNA mRNA upstream 22181 1172137 ~ 1184529 (+) True CI01000304_01173248_01184405
CI01000304_00983004_01018406.mRNA mRNA upstream 188017 982912 ~ 1018693 (+) True CI01000304_00983004_01018406
CI01000304_00962923_00975418.mRNA mRNA upstream 231066 962753 ~ 975644 (+) True CI01000304_00962923_00975418
CI01000304_00933179_00942864.mRNA mRNA upstream 262845 931798 ~ 943865 (+) True CI01000304_00933179_00942864
CI01000304_00884782_00917034.mRNA mRNA upstream 289676 884490 ~ 917034 (+) True CI01000304_00884782_00917034
CI01000304_01269500_01313976.mRNA mRNA downstream 61047 1268023 ~ 1314632 (+) True CI01000304_01269500_01313976
CI01000304_01323957_01324596.mRNA mRNA downstream 116981 1323957 ~ 1326322 (+) True CI01000304_01323957_01324596
CI01000304_01337171_01361506.mRNA mRNA downstream 130195 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01366207_01367994.mRNA mRNA downstream 159144 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
CI01000304_01369056_01372878.mRNA mRNA downstream 161620 1368596 ~ 1372972 (+) True CI01000304_01369056_01372878
TU480282 other upstream 331461 872670 ~ 875249 (+) True G418116
TU480224 other upstream 642259 558092 ~ 564451 (+) True G418059
TU480131 other upstream 978857 226703 ~ 227853 (+) True G417987
TU481280 other downstream 885518 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 3096360 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3966247 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 5034257 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 6145673 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile