RNA id: TU480917


Basic Information

Item Value
RNA id TU480917
length 369
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G418667
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1365014 ~ 1365559 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCCAGAATGAACAAACAGAAAGATCAATTACTGTTTTAACTCACGATATGTACGCAGGATAGACGAATCCAATGAGATTACAAAGAAGAGAAGCGCCGTATCCGATCACCAGATAAACTGCAATGAACGCGATGACAGCATATGCGATGTAGGACCTGCTCACTCCAGTCTTCGCTTCTATCTTCGCCAACACGTCCGTCATGACATTCTTCTCGTAAAGGAACTTGTCGAAACGTTCTTTTAGCGCGAAGGCCATGATTTGTCTGTATTTATGATTGCTTAATTATAGTATCAAATATAAATCATGAACAGCAGCTTAACTCCTGCTGCTCTCAGTTCAGTGTGACTTTGCACGCTGAGGGTGTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480955 lncRNA upstream 32417 1332334 ~ 1332597 (+) True G418691
TU480882 lncRNA upstream 158038 1206710 ~ 1206976 (+) True G418649
TU480279 lncRNA upstream 158604 1205591 ~ 1206410 (+) True G418113
TU480438 lncRNA upstream 184997 1179814 ~ 1180017 (+) True G418261
TU480434 lncRNA upstream 198416 1166295 ~ 1166598 (+) True G418257
TU480958 lncRNA downstream 10402 1375961 ~ 1376294 (+) True G418694
TU480965 lncRNA downstream 16788 1382347 ~ 1382859 (+) True G418701
TU480966 lncRNA downstream 17455 1383014 ~ 1383342 (+) True G418702
TU480914 lncRNA downstream 73219 1438778 ~ 1447835 (+) True G418666
TU480934 lncRNA downstream 112990 1478549 ~ 1486508 (+) True G418675
CI01000304_01337171_01361506.mRNA mRNA upstream 3508 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01323957_01324596.mRNA mRNA upstream 38692 1323957 ~ 1326322 (+) True CI01000304_01323957_01324596
CI01000304_01269500_01313976.mRNA mRNA upstream 50382 1268023 ~ 1314632 (+) True CI01000304_01269500_01313976
CI01000304_01173248_01184405.mRNA mRNA upstream 180485 1172137 ~ 1184529 (+) True CI01000304_01173248_01184405
CI01000304_00983004_01018406.mRNA mRNA upstream 346321 982912 ~ 1018693 (+) True CI01000304_00983004_01018406
CI01000304_01366207_01367994.mRNA mRNA downstream 561 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
CI01000304_01369056_01372878.mRNA mRNA downstream 3037 1368596 ~ 1372972 (+) True CI01000304_01369056_01372878
CI01000304_01375020_01379551.mRNA mRNA downstream 9312 1374871 ~ 1379816 (+) True CI01000304_01375020_01379551
CI01000304_01392985_01399147.mRNA mRNA downstream 27426 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_01681164_01706159.mRNA mRNA downstream 315605 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
TU480282 other upstream 489765 872670 ~ 875249 (+) True G418116
TU480224 other upstream 800563 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1137161 226703 ~ 227853 (+) True G417987
TU481280 other downstream 726935 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2937777 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3807664 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4875674 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5987090 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile