RNA id: TU480958


Basic Information

Item Value
RNA id TU480958
length 334
lncRNA type intronic
GC content 0.32
exon number 1
gene id G418694
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1375961 ~ 1376294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCAACTAGCATCCCAAATGAAGCTTAACACACATACAGAACTAGGTGTCCTGTTACAGGACACAAGAAAACTGATAAAAACTTTTTTATGACAGTCAGGAATTTGTGACTCTGACTTCATTCTTTCTGAGAAGGACAAATAAACCCTCTTAATCCTATATATTCTATATATAACCACATGAGAAATGTATAAACGTGTATCCAATTTTCCCCTCTCATGATTTTCCTTTTATAGGGTTTATTCAATGTATTAATTCTCTCTTTTGAACTATTTTGGTATTAATGTTTCAGAGTTGCAAATTTATAGTTAACTAAAATCACATGGGTTTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480917 lncRNA upstream 10402 1365014 ~ 1365559 (+) True G418667
TU480955 lncRNA upstream 43364 1332334 ~ 1332597 (+) True G418691
TU480882 lncRNA upstream 168985 1206710 ~ 1206976 (+) True G418649
TU480279 lncRNA upstream 169551 1205591 ~ 1206410 (+) True G418113
TU480438 lncRNA upstream 195944 1179814 ~ 1180017 (+) True G418261
TU480965 lncRNA downstream 6053 1382347 ~ 1382859 (+) True G418701
TU480966 lncRNA downstream 6720 1383014 ~ 1383342 (+) True G418702
TU480914 lncRNA downstream 62484 1438778 ~ 1447835 (+) True G418666
TU480934 lncRNA downstream 102255 1478549 ~ 1486508 (+) True G418675
TU480947 lncRNA downstream 112261 1488555 ~ 1489020 (+) True G418683
CI01000304_01369056_01372878.mRNA mRNA upstream 2989 1368596 ~ 1372972 (+) True CI01000304_01369056_01372878
CI01000304_01366207_01367994.mRNA mRNA upstream 7959 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
CI01000304_01337171_01361506.mRNA mRNA upstream 14455 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01323957_01324596.mRNA mRNA upstream 49639 1323957 ~ 1326322 (+) True CI01000304_01323957_01324596
CI01000304_01269500_01313976.mRNA mRNA upstream 61329 1268023 ~ 1314632 (+) True CI01000304_01269500_01313976
CI01000304_01392985_01399147.mRNA mRNA downstream 16691 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_01681164_01706159.mRNA mRNA downstream 304870 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
CI01000304_01718700_01722248.mRNA mRNA downstream 342034 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_01829156_01835147.mRNA mRNA downstream 452862 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01877287_01890608.mRNA mRNA downstream 499096 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
TU480282 other upstream 500712 872670 ~ 875249 (+) True G418116
TU480224 other upstream 811510 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1148108 226703 ~ 227853 (+) True G417987
TU481280 other downstream 716200 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2927042 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3796929 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4864939 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5976355 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile