RNA id: TU480920


Basic Information

Item Value
RNA id TU480920
length 501
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G418669
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1564905 ~ 1568257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGCTGGACTCCACCCAGTTGACGGCGTTGAAGAGTGCGGCGGTTCCTCCATAGCACGCGTTAGTGGTGTCCACTCCCTCCACGTCAGTGTTGCCCGACTCTTCGAACAGCTGCATCAGGACAGTCTTGGTGGATTTAGACTTATCGATGATGGTTTCCGTGCCCACCTCCAGCCTACCCACACTGTCGTAGGACAAGCTGTTCCTCTCCATTAATCGCTGCACCACCGTCAGGCACAGAGAGTTAATGTCCTCCCGGTCCGAGCAGAAACCCATGCGCGCCTGTCCCAGCCCAACGGTGTATTTACCGGCCCCGACGCCATCGTACTCTTCCAGCTCTGCTTGGTCCACGTACTGAGAGGGCACGTACACCTCCATGGCGATGATTCCCACATCTTTAGGCCATGTGGCCTCACAAATTGCAGGGAGTGATCCAGGCATTCTGAATGGACTGAGACTTTATAATTGAGTTCAATTCCCGGGTAGTAATAGTCGCTTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480923 lncRNA upstream 4250 1521407 ~ 1560655 (+) True G418671
TU480947 lncRNA upstream 75885 1488555 ~ 1489020 (+) True G418683
TU480934 lncRNA upstream 78397 1478549 ~ 1486508 (+) True G418675
TU480914 lncRNA upstream 117070 1438778 ~ 1447835 (+) True G418666
TU480966 lncRNA upstream 181563 1383014 ~ 1383342 (+) True G418702
TU481015 lncRNA downstream 979 1569236 ~ 1569435 (+) True G418751
TU481068 lncRNA downstream 110534 1678791 ~ 1740632 (+) True G418799
TU481067 lncRNA downstream 148270 1716527 ~ 1717649 (+) True G418798
TU481059 lncRNA downstream 202310 1770567 ~ 1809992 (+) True G418790
TU481136 lncRNA downstream 289910 1858167 ~ 1858452 (+) True G418860
CI01000304_01392985_01399147.mRNA mRNA upstream 165752 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_01375020_01379551.mRNA mRNA upstream 185089 1374871 ~ 1379816 (+) True CI01000304_01375020_01379551
CI01000304_01369056_01372878.mRNA mRNA upstream 191933 1368596 ~ 1372972 (+) True CI01000304_01369056_01372878
CI01000304_01366207_01367994.mRNA mRNA upstream 196903 1366120 ~ 1368002 (+) True CI01000304_01366207_01367994
CI01000304_01337171_01361506.mRNA mRNA upstream 203399 1337171 ~ 1361506 (+) True CI01000304_01337171_01361506
CI01000304_01681164_01706159.mRNA mRNA downstream 112907 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
CI01000304_01718700_01722248.mRNA mRNA downstream 150071 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_01829156_01835147.mRNA mRNA downstream 260899 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01877287_01890608.mRNA mRNA downstream 307133 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
CI01000304_02136252_02167869.mRNA mRNA downstream 567995 2136252 ~ 2168463 (+) True CI01000304_02136252_02167869
TU480282 other upstream 689656 872670 ~ 875249 (+) True G418116
TU480224 other upstream 1000454 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1337052 226703 ~ 227853 (+) True G417987
TU481280 other downstream 524237 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2735079 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3604966 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4672976 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5784392 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile