Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU481145 |
| length | 1621 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G418865 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 1899156 ~ 1900776 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU481137 | lncRNA | upstream | 39050 | 1859877 ~ 1860106 (+) | True | G418861 |
| TU481136 | lncRNA | upstream | 40704 | 1858167 ~ 1858452 (+) | True | G418860 |
| TU481059 | lncRNA | upstream | 89164 | 1770567 ~ 1809992 (+) | True | G418790 |
| TU481068 | lncRNA | upstream | 158524 | 1678791 ~ 1740632 (+) | True | G418799 |
| TU481067 | lncRNA | upstream | 181507 | 1716527 ~ 1717649 (+) | True | G418798 |
| TU481152 | lncRNA | downstream | 8343 | 1909119 ~ 1909325 (+) | True | G418872 |
| TU481163 | lncRNA | downstream | 23138 | 1923914 ~ 1924175 (+) | True | G418883 |
| TU481164 | lncRNA | downstream | 23643 | 1924419 ~ 1925229 (+) | True | G418884 |
| TU481165 | lncRNA | downstream | 25140 | 1925916 ~ 1926137 (+) | True | G418885 |
| TU481166 | lncRNA | downstream | 25446 | 1926222 ~ 1926560 (+) | True | G418886 |
| CI01000304_01877287_01890608.mRNA | mRNA | upstream | 8410 | 1875390 ~ 1890746 (+) | True | CI01000304_01877287_01890608 |
| CI01000304_01829156_01835147.mRNA | mRNA | upstream | 63991 | 1829156 ~ 1835165 (+) | True | CI01000304_01829156_01835147 |
| CI01000304_01718700_01722248.mRNA | mRNA | upstream | 176880 | 1718328 ~ 1722276 (+) | True | CI01000304_01718700_01722248 |
| CI01000304_01681164_01706159.mRNA | mRNA | upstream | 192759 | 1681164 ~ 1706397 (+) | True | CI01000304_01681164_01706159 |
| CI01000304_01392985_01399147.mRNA | mRNA | upstream | 500003 | 1392985 ~ 1399153 (+) | True | CI01000304_01392985_01399147 |
| CI01000304_02136252_02167869.mRNA | mRNA | downstream | 235476 | 2136252 ~ 2168463 (+) | True | CI01000304_02136252_02167869 |
| CI01000304_02206338_02219356.mRNA | mRNA | downstream | 305562 | 2206338 ~ 2219642 (+) | True | CI01000304_02206338_02219356 |
| CI01000304_02229520_02235812.mRNA | mRNA | downstream | 328363 | 2229139 ~ 2236204 (+) | True | CI01000304_02229520_02235812 |
| CI01000304_02236583_02240921.mRNA | mRNA | downstream | 335591 | 2236367 ~ 2241608 (+) | True | CI01000304_02236583_02240921 |
| CI01000304_02254859_02262580.mRNA | mRNA | downstream | 353118 | 2253894 ~ 2264078 (+) | False | CI01000304_02254859_02262580 |
| TU480282 | other | upstream | 1023907 | 872670 ~ 875249 (+) | True | G418116 |
| TU480224 | other | upstream | 1334705 | 558092 ~ 564451 (+) | True | G418059 |
| TU480131 | other | upstream | 1671303 | 226703 ~ 227853 (+) | True | G417987 |
| TU481280 | other | downstream | 191718 | 2092494 ~ 2093678 (+) | True | G418981 |
| TU482914 | other | downstream | 2402560 | 4303336 ~ 4303832 (+) | True | G420445 |
| TU483012 | other | downstream | 3272447 | 5173223 ~ 5173339 (+) | True | G420524 |
| TU483706 | other | downstream | 4340457 | 6241233 ~ 6242997 (+) | True | G421162 |
| TU483945 | other | downstream | 5451873 | 7352649 ~ 7354332 (+) | True | CI01000304_07352697_07354032 |
